Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O06
         (1023 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    33   0.33 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    33   0.33 
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    29   7.1  
Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 23/73 (31%), Positives = 23/73 (31%)
 Frame = +3

Query: 507 PSXXXGPXXQPXXXPXXIVRXAPPXXXXXAPPPPXXRXXPSPGXAPXXXGXXXXXXXPSP 686
           PS    P   P   P    R  PP      PPPP     P PG  P   G       P P
Sbjct: 268 PSVTPMPPPMPPT-PGMTPRPPPPPSSGMWPPPPP----PPPGRTPGPPGMPGMPPPPPP 322

Query: 687 XRXXPLXPXGXXP 725
            R  P    G  P
Sbjct: 323 SRFGPPGMGGMPP 335


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 23/73 (31%), Positives = 23/73 (31%)
 Frame = +3

Query: 507 PSXXXGPXXQPXXXPXXIVRXAPPXXXXXAPPPPXXRXXPSPGXAPXXXGXXXXXXXPSP 686
           PS    P   P   P    R  PP      PPPP     P PG  P   G       P P
Sbjct: 278 PSVTPMPPPMPPT-PGMTPRPPPPPSSGMWPPPPP----PPPGRTPGPPGMPGMPPPPPP 332

Query: 687 XRXXPLXPXGXXP 725
            R  P    G  P
Sbjct: 333 SRFGPPGMGGMPP 345


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 17/55 (30%), Positives = 19/55 (34%)
 Frame = +3

Query: 522 GPXXQPXXXPXXIVRXAPPXXXXXAPPPPXXRXXPSPGXAPXXXGXXXXXXXPSP 686
           G    P   P   V   PP      PPPP  +  PSP  A    G       P+P
Sbjct: 805 GGPRPPYPYPGGPVPPGPPQNRM--PPPPPAQGAPSPSGAAGSNGKQPRYGTPAP 857


>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +3

Query: 507 PSXXXGPXXQPXXXPXXIVRXAPPXXXXXAPPPPXXRXXPSPGXAP 644
           P     P  QP   P  I    P       PPPP     P P   P
Sbjct: 328 PPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPPPQTP 373


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 573 PPXXXXXAPPPPXXRXXPSPGXAPXXXGXXXXXXXPSPXRXXP 701
           PP     APPPP     PSP   P           P P    P
Sbjct: 459 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATP 501


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 573 PPXXXXXAPPPPXXRXXPSPGXAPXXXGXXXXXXXPSPXRXXP 701
           PP     APPPP     PSP   P           P P    P
Sbjct: 466 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATP 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,790,245
Number of Sequences: 27780
Number of extensions: 99263
Number of successful extensions: 377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2699257404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)