Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O04
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.2  
03_02_0178 + 6195402-6199158,6199438-6200003                           28   8.7  
02_01_0143 + 1030081-1030587,1032106-1032114                           28   8.7  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 688 SRGKRLVSL*SCRVSPPXT*ASIFVMLVQGGGAYGKTPAT 569
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +2

Query: 623 RRSSXRWRNPTGL*RYQAFPPGSSLGALSXFRPCRLPDTCS 745
           RR S  WR+  GL  Y+A P  S  GA     P RLP   S
Sbjct: 113 RRQSGGWRDSEGLDGYRAAPRRS--GASPPTPPLRLPSESS 151


>02_01_0143 + 1030081-1030587,1032106-1032114
          Length = 171

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 671 QAFPPGSSLGALSXFRPCRLPDT 739
           +A PPGS L A+  FRP R+ +T
Sbjct: 130 RAAPPGSRLAAVRVFRPERIAET 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,056,972
Number of Sequences: 37544
Number of extensions: 353471
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)