Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O02
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    34   0.022
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ...    27   2.6  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   3.4  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    27   4.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   6.0  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    26   6.0  

>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +2

Query: 29  LKLLTRNLVSFGFY*RAVVGXCXTTLQIQCSRSLYLLSHSRAFNLLIVGS--YSHYRATI 202
           + L++RNL  F F+ R +      TL++  +  L  L+    F  ++  S   +   +T 
Sbjct: 376 IPLISRNLRDFSFFKRCLEEDIEPTLRLDHASGLSWLTRRSVFTAILESSLIINPLHSTS 435

Query: 203 YDSSSMVTICGVNK*PRVNYLDSRQRP 283
             SS   ++CG N+   +   + R RP
Sbjct: 436 LLSSQPCSLCGFNRTQPLRQFEFRSRP 462


>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 406 SRPLKTFRMLCSCLDYGNRCPTKPTLQLSQLTPYPKSCISFG 281
           +RP++  R + SC +YG+RC     L L +    P +C + G
Sbjct: 63  NRPVRE-RSIESCFEYGSRCGFWRILNLFKKHKVPFTCWAIG 103


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 309 LIPNHVFHLG-RCRLSR*FT--LGYLFTPQIVTIDELSYIVAR 190
           ++ N   H+  +C L   FT     L+ P I+ +DE+ +++AR
Sbjct: 252 ILENEDHHINFQCELESHFTQSANELYNPVIIVLDEMDHLIAR 294


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 415 STSSRPLKTFRMLCSC 368
           STS+  LKTFR +C C
Sbjct: 612 STSAEELKTFRAMCKC 627


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 262 SGQPAATQMKYMIWDKELAAKAAKWASSDN--DFHNPDRSIASER 390
           S  P+  +  Y   D E++   A+ A   N  + H+P RSI+SE+
Sbjct: 597 SNSPSDIESNYSADDNEISKSKAQNAIDFNVTNTHSPSRSISSEK 641


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 346 PTKPTLQLSQLTPYPKSCISFGSLPAVQI 260
           P++  + +SQ++   K C S+ SLP +Q+
Sbjct: 336 PSQNDISVSQISVDEKICTSYESLPKIQL 364


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 253 GELSGQPAATQMKYMIWDKELAAKAAKWASSDNDFHNPDRSIASERF 393
           G+++ +  A     MIWDK++A  A        D++    SI+  R+
Sbjct: 411 GQITEKDVARVASEMIWDKDIAVSAVGSIEGLLDYNRIRSSISMNRW 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,528,097
Number of Sequences: 5004
Number of extensions: 74668
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)