Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O01
         (1088 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.37 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.0  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
 Frame = +1

Query: 946  PXHPXTT------SXXPPXXKPPXHXPXXLXXPXPXTQPPXXLSFXPLXPPPL 1086
            P HP +T      S  PP    P   P  +  P P + PP         PPPL
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 1080 GGXXGXKGEXXGGLGXWGGXG*GXGXVXG 994
            GG  G  G   GGLG +GG   G G   G
Sbjct: 238  GGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
 Frame = +2

Query: 893  PPXXTPXHXPXSSPXXXXXXXXXXXXXXXXXXNX-PSTHPXPXPXPPHXPNPPXXSPFXP 1069
            PP  TP   P S+P                     P + P   P P   P  P   P  P
Sbjct: 415  PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 1070 XHPP 1081
              PP
Sbjct: 475  APPP 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,579
Number of Sequences: 5004
Number of extensions: 22183
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 573748416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)