Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_O01
         (1088 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   1.4  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    30   3.3  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   5.8  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   7.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   7.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   7.7  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
            (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 1007 PXPXPXPPHXPNPPXXSPFXPXHP 1078
            P P P PPH P PP   P  P  P
Sbjct: 132  PPPPPPPPHYPPPPPHYPPPPPAP 155


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical protein
            C50F7.5 protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = +2

Query: 995  PSTHPXPX--PXPPHXPNPPXXSPFXPXHPP 1081
            PS  P P   P PP  P PP   P  P  PP
Sbjct: 234  PSDEPSPSDPPGPPGPPGPPTRRPPGPPGPP 264


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
            related) protein 4 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +1

Query: 979  PXXKPPXHXPXXLXXPXPXTQPPXXLSFXPLXPPP 1083
            P   PP   P  L  P P   PP      P+ PPP
Sbjct: 31   PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPP 65



 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = +1

Query: 946  PXHPXTTSXXPPXXKPPXHXPXXLXXPXPXTQPPXXLSFXPLXPPP 1083
            P  P   +  P    PP   P     P P   PP      P+ PPP
Sbjct: 32   PPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPP 77


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 976  PPXXKPPXHXPXXLXXPXPXTQPPXXLSFXPLXPPP 1083
            PP   PP   P     P P   PP      P  PPP
Sbjct: 742  PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 976  PPXXKPPXHXPXXLXXPXPXTQPPXXLSFXPLXPPP 1083
            PP   PP   P     P P   PP      P  PPP
Sbjct: 742  PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +1

Query: 976  PPXXKPPXHXPXXLXXPXPXTQPPXXLSFXPLXPPP 1083
            PP   PP   P     P P   PP      P  PPP
Sbjct: 325  PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,014,281
Number of Sequences: 27780
Number of extensions: 154901
Number of successful extensions: 1096
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2929426640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)