Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_N23
(1055 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 111 2e-25
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 111 2e-25
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 105 1e-23
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 105 1e-23
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 105 1e-23
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 66 8e-12
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 36 0.007
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 33 0.089
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 111 bits (267), Expect = 2e-25
Identities = 64/106 (60%), Positives = 68/106 (64%)
Frame = +2
Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIXXRIHT 289
LTGKTITLEVE+SDTI NVK+KI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI + T
Sbjct: 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI-QKEST 66
Query: 290 SPGFET*RRYN*TFXXXXXXXXITVXK*FAXRCYARLHPRCYNCRK 427
R K +CYARL PR NCRK
Sbjct: 67 LHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRK 112
Score = 41.9 bits (94), Expect = 1e-04
Identities = 25/61 (40%), Positives = 30/61 (49%)
Frame = +3
Query: 279 ESTLHLVLRLKGGTIEPSLRHXRHEV*L*XNDLPXDAMPVXILAATTAARXXCGHTTNLX 458
ESTLHLVLRL+GG IEPSL+ + + AT + CGHT L
Sbjct: 64 ESTLHLVLRLRGGIIEPSLKALASKYNC-EKQICRKCYARLPPRATNCRKKKCGHTNQLR 122
Query: 459 P 461
P
Sbjct: 123 P 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 111 bits (267), Expect = 2e-25
Identities = 64/106 (60%), Positives = 68/106 (64%)
Frame = +2
Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIXXRIHT 289
LTGKTITLEVE+SDTI NVK+KI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI + T
Sbjct: 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI-QKEST 66
Query: 290 SPGFET*RRYN*TFXXXXXXXXITVXK*FAXRCYARLHPRCYNCRK 427
R K +CYARL PR NCRK
Sbjct: 67 LHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRK 112
Score = 41.9 bits (94), Expect = 1e-04
Identities = 25/61 (40%), Positives = 30/61 (49%)
Frame = +3
Query: 279 ESTLHLVLRLKGGTIEPSLRHXRHEV*L*XNDLPXDAMPVXILAATTAARXXCGHTTNLX 458
ESTLHLVLRL+GG IEPSL+ + + AT + CGHT L
Sbjct: 64 ESTLHLVLRLRGGIIEPSLKALASKYNC-EKQICRKCYARLPPRATNCRKKKCGHTNQLR 122
Query: 459 P 461
P
Sbjct: 123 P 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 105 bits (252), Expect = 1e-23
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
LTGKTITLEVE+SDTI NVK+KI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI
Sbjct: 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 279 ESTLHLVLRLKGG 317
ESTLHLVLRL+GG
Sbjct: 64 ESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 105 bits (252), Expect = 1e-23
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
LTGKTITLEVE+SDTI NVK+KI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI
Sbjct: 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 105 bits (252), Expect = 1e-23
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
LTGKTITLEVE+SDTI NVK+KI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI
Sbjct: 84 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 105 bits (252), Expect = 1e-23
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
LTGKTITLEVE+SDTI NVK+KI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI
Sbjct: 160 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 105 bits (252), Expect = 1e-23
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
LTGKTITLEVE+SDTI NVK+KI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI
Sbjct: 236 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Score = 105 bits (252), Expect = 1e-23
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
LTGKTITLEVE+SDTI NVK+KI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI
Sbjct: 312 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 279 ESTLHLVLRLKGG 317
ESTLHLVLRL+GG
Sbjct: 64 ESTLHLVLRLRGG 76
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 279 ESTLHLVLRLKGG 317
ESTLHLVLRL+GG
Sbjct: 140 ESTLHLVLRLRGG 152
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 279 ESTLHLVLRLKGG 317
ESTLHLVLRL+GG
Sbjct: 216 ESTLHLVLRLRGG 228
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 279 ESTLHLVLRLKGG 317
ESTLHLVLRL+GG
Sbjct: 292 ESTLHLVLRLRGG 304
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 279 ESTLHLVLRLKGG 317
ESTLHLVLRL+GG
Sbjct: 368 ESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 105 bits (252), Expect = 1e-23
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
LTGKTITLEVE+SDTI NVK+KI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI
Sbjct: 8 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 279 ESTLHLVLRLKGG 317
ESTLHLVLRL+GG
Sbjct: 64 ESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 66.1 bits (154), Expect = 8e-12
Identities = 26/59 (44%), Positives = 42/59 (71%)
Frame = +2
Query: 95 IRQEPLTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
I+ + LTGK I L+++ +D + +K ++ +KEGIPP QQRLI+AGKQ+ D + Y++
Sbjct: 3 IKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHL 61
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 36.3 bits (80), Expect = 0.007
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 116 GKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGI 61
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 32.7 bits (71), Expect = 0.089
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +2
Query: 83 TSANIRQEPLTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSD 262
T+ ++ + + + V++ ++ +K I I ++QRLI+AG+ L+D +L
Sbjct: 2 TNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKT 61
Query: 263 YNI 271
Y I
Sbjct: 62 YKI 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,376
Number of Sequences: 5004
Number of extensions: 31133
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 555217708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -