Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N23
         (1055 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    105   2e-24

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  105 bits (253), Expect = 2e-24
 Identities = 51/54 (94%), Positives = 51/54 (94%)
 Frame = +2

Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
           LTGKTITLEVE SDTI NVKAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI
Sbjct: 8   LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61



 Score =  105 bits (253), Expect = 2e-24
 Identities = 51/54 (94%), Positives = 51/54 (94%)
 Frame = +2

Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
           LTGKTITLEVE SDTI NVKAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI
Sbjct: 84  LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137



 Score =  105 bits (253), Expect = 2e-24
 Identities = 51/54 (94%), Positives = 51/54 (94%)
 Frame = +2

Query: 110 LTGKTITLEVEASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 271
           LTGKTITLEVE SDTI NVKAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYNI
Sbjct: 160 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213



 Score = 28.7 bits (61), Expect = 0.31
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 279 ESTLHLVLRLKGG 317
           ESTLHLVLRL+GG
Sbjct: 64  ESTLHLVLRLRGG 76



 Score = 28.7 bits (61), Expect = 0.31
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 279 ESTLHLVLRLKGG 317
           ESTLHLVLRL+GG
Sbjct: 140 ESTLHLVLRLRGG 152



 Score = 28.7 bits (61), Expect = 0.31
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 279 ESTLHLVLRLKGG 317
           ESTLHLVLRL+GG
Sbjct: 216 ESTLHLVLRLRGG 228


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,521
Number of Sequences: 2352
Number of extensions: 9319
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 117574314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)