Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N23
         (1055 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              30   0.030
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   2.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 30.3 bits (65), Expect = 0.030
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 101 QEPLTGK-TITLEVE-ASDTIXNVKAKIXDKEGIPPDQQRLIFAGKQLEDGRTL 256
           QEP+T + T  L ++  +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 715 QEPVTNRPTGQLLLDYLTDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 142 SXRHYXKCQS*NXRQGRYSSRPTTSHLCRETIRRWPHS 255
           S +H  KC +       +SS P  +H CR     W HS
Sbjct: 162 SVKHVAKCAT------DFSSWPYDTHRCRINFGSWVHS 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,576
Number of Sequences: 438
Number of extensions: 2682
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35186292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)