Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N22
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    31   0.28 
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   2.6  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   3.5  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    27   4.6  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    26   6.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   8.0  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
 Frame = -2

Query: 433 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 275
           L ++CP      T GP PG T  +PT  ++        Y     S+++S I  +ST+ + 
Sbjct: 36  LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94

Query: 274 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 113
            S      V  S + +   T+       T  S  T SS+ S  T P +S+++ +
Sbjct: 95  SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 346 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 167
           V  EYI++ ++   S    T+  I + +Y   +   E   + +     C RNTLLS+H  
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199

Query: 166 SSLR 155
           +SLR
Sbjct: 200 ASLR 203


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -1

Query: 353 RDGESRVYPAVR-VHNGERDFINDAVN 276
           ++G+  ++P+V+ +H GER+ IND V+
Sbjct: 20  KNGQILLHPSVQPLHPGERELINDIVS 46


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 50  HSAPDTRT*RTSVLTTATDAPRARH 124
           HS P TR  R SV TTAT   R+++
Sbjct: 160 HSPPSTRKRRGSVGTTATHTKRSKN 184


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = +2

Query: 572 LKTSASRVVKSYLSTISTRTCTLKTFTLSRVLYM*SSQLYQRSGSNILHGLLFGRRIFN 748
           L T AS +VK  L+ I      +    L+R LY     + Q++GSN+   LLFG  +F+
Sbjct: 185 LSTLASHIVKYVLTGIGL---LISIVFLTRNLY----PICQQAGSNLCKLLLFGIIVFH 236


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +2

Query: 548 SWILTVPSLKTSASRVVKSYLSTISTRTCTLKTFTLSRVLYM*SSQLYQRSGS 706
           SW  T P   TS S+V  S    +++   T  TFT S  +   SS     S S
Sbjct: 618 SWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTS 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,630,766
Number of Sequences: 5004
Number of extensions: 76676
Number of successful extensions: 237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)