Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N20
         (895 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U47924-15|AAB51321.1| 1190|Homo sapiens DRPLA protein.                 30   9.9  
U23851-1|AAB50276.1| 1184|Homo sapiens atrophin-1 protein.             30   9.9  
D38529-1|BAA07534.1| 1182|Homo sapiens DRPLA protein protein.          30   9.9  
D31840-1|BAA06626.1| 1185|Homo sapiens DRPLA protein.                  30   9.9  
BC051795-1|AAH51795.1| 1191|Homo sapiens atrophin 1 protein.           30   9.9  
AF289023-1|AAG01854.1|  495|Homo sapiens formiminotransferase cy...    30   9.9  
AB209345-1|BAD92582.1|  774|Homo sapiens atrophin-1 variant prot...    30   9.9  

>U47924-15|AAB51321.1| 1190|Homo sapiens DRPLA protein.
          Length = 1190

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 24/74 (32%), Positives = 27/74 (36%)
 Frame = +3

Query: 606 AFPPGKLPRALSCXRPXPXTGXLSXFPPFGXAWRXPX*PTPVGXXXFGXXSFRXXPGXGL 785
           A PPG  P +    R     G     PP G     P  PT VG            P   L
Sbjct: 652 ATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPT-VGPGPLPPAGPSGLP--SL 708

Query: 786 PKPPXSXXTGXPLS 827
           P PP +  +G PLS
Sbjct: 709 PPPPAAPASGPPLS 722


>U23851-1|AAB50276.1| 1184|Homo sapiens atrophin-1 protein.
          Length = 1184

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 24/74 (32%), Positives = 27/74 (36%)
 Frame = +3

Query: 606 AFPPGKLPRALSCXRPXPXTGXLSXFPPFGXAWRXPX*PTPVGXXXFGXXSFRXXPGXGL 785
           A PPG  P +    R     G     PP G     P  PT VG            P   L
Sbjct: 646 ATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPT-VGPGPLPPAGPSGLP--SL 702

Query: 786 PKPPXSXXTGXPLS 827
           P PP +  +G PLS
Sbjct: 703 PPPPAAPASGPPLS 716


>D38529-1|BAA07534.1| 1182|Homo sapiens DRPLA protein protein.
          Length = 1182

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 24/74 (32%), Positives = 27/74 (36%)
 Frame = +3

Query: 606 AFPPGKLPRALSCXRPXPXTGXLSXFPPFGXAWRXPX*PTPVGXXXFGXXSFRXXPGXGL 785
           A PPG  P +    R     G     PP G     P  PT VG            P   L
Sbjct: 647 ATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPT-VGPGPLPPAGPSGLP--SL 703

Query: 786 PKPPXSXXTGXPLS 827
           P PP +  +G PLS
Sbjct: 704 PPPPAAPASGPPLS 717


>D31840-1|BAA06626.1| 1185|Homo sapiens DRPLA protein.
          Length = 1185

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 24/74 (32%), Positives = 27/74 (36%)
 Frame = +3

Query: 606 AFPPGKLPRALSCXRPXPXTGXLSXFPPFGXAWRXPX*PTPVGXXXFGXXSFRXXPGXGL 785
           A PPG  P +    R     G     PP G     P  PT VG            P   L
Sbjct: 647 ATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPT-VGPGPLPPAGPSGLP--SL 703

Query: 786 PKPPXSXXTGXPLS 827
           P PP +  +G PLS
Sbjct: 704 PPPPAAPASGPPLS 717


>BC051795-1|AAH51795.1| 1191|Homo sapiens atrophin 1 protein.
          Length = 1191

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 24/74 (32%), Positives = 27/74 (36%)
 Frame = +3

Query: 606 AFPPGKLPRALSCXRPXPXTGXLSXFPPFGXAWRXPX*PTPVGXXXFGXXSFRXXPGXGL 785
           A PPG  P +    R     G     PP G     P  PT VG            P   L
Sbjct: 653 ATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPT-VGPGPLPPAGPSGLP--SL 709

Query: 786 PKPPXSXXTGXPLS 827
           P PP +  +G PLS
Sbjct: 710 PPPPAAPASGPPLS 723


>AF289023-1|AAG01854.1|  495|Homo sapiens formiminotransferase
           cyclodeaminase form D protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 471 PAKGQEP*KGRVAGVFHRLRPPDEHHK 551
           P  GQ P  GRV  +F R   P+ HH+
Sbjct: 466 PGGGQSPGDGRVWRIFQRAHQPEGHHR 492


>AB209345-1|BAD92582.1|  774|Homo sapiens atrophin-1 variant
           protein.
          Length = 774

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 24/74 (32%), Positives = 27/74 (36%)
 Frame = +3

Query: 606 AFPPGKLPRALSCXRPXPXTGXLSXFPPFGXAWRXPX*PTPVGXXXFGXXSFRXXPGXGL 785
           A PPG  P +    R     G     PP G     P  PT VG            P   L
Sbjct: 236 ATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPT-VGPGPLPPAGPSGLP--SL 292

Query: 786 PKPPXSXXTGXPLS 827
           P PP +  +G PLS
Sbjct: 293 PPPPAAPASGPPLS 306


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,368,112
Number of Sequences: 237096
Number of extensions: 2349356
Number of successful extensions: 6295
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6246
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)