Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N20
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        30   1.9  
AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical...    30   1.9  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    30   1.9  

>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -3

Query: 713 RXAPRXPEGXKGGQVSGXRXGSXTGERT-RELSRGKRL 603
           R   R P+G +G  ++G + G+ +GE T +EL+R +RL
Sbjct: 479 RGVLRTPQGGQGYGINGAQYGAVSGEITSQELARAQRL 516


>AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11b protein.
          Length = 996

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -3

Query: 713 RXAPRXPEGXKGGQVSGXRXGSXTGERT-RELSRGKRL 603
           R   R P+G +G  ++G + G+ +GE T +EL+R +RL
Sbjct: 479 RGVLRTPQGGQGYGINGAQYGAVSGEITSQELARAQRL 516


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11a protein.
          Length = 2553

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -3

Query: 713 RXAPRXPEGXKGGQVSGXRXGSXTGERT-RELSRGKRL 603
           R   R P+G +G  ++G + G+ +GE T +EL+R +RL
Sbjct: 479 RGVLRTPQGGQGYGINGAQYGAVSGEITSQELARAQRL 516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,305
Number of Sequences: 27780
Number of extensions: 323496
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)