Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N19
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0931 - 26052135-26052176,26052273-26052377,26052489-260525...    30   2.2  
12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104     29   6.7  

>06_03_0931 -
           26052135-26052176,26052273-26052377,26052489-26052584,
           26052686-26052757,26052879-26052974,26053054-26053155,
           26053258-26053347,26053452-26053535,26053623-26053697,
           26053847-26053930,26054012-26054242
          Length = 358

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 211 GMLVFLTNMLTSVRITDTSRSTTALCAIFF-FFLSFRY 101
           G ++ LT+++ S+ I   S+S   LCA+F  FFL   Y
Sbjct: 148 GAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAY 185


>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
          Length = 744

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 123 KNIAQRAVVDREVSVILTEVSMFVRNTNIPKGHRTP 230
           +N+  R ++D+E  V+L ++S+   N   P+G   P
Sbjct: 645 RNMLDREIMDKETMVVLEKLSILAANCLRPRGDDRP 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,717,680
Number of Sequences: 37544
Number of extensions: 172786
Number of successful extensions: 254
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)