Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_N19
(900 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC115737-1|AAI15738.1| 1272|Homo sapiens UPF2 regulator of nonse... 43 0.001
BC114964-1|AAI14965.1| 1272|Homo sapiens UPF2 regulator of nonse... 43 0.001
AY013249-1|AAG48509.1| 1272|Homo sapiens hUPF2 protein. 43 0.001
AL645617-1|CAI16755.1| 1272|Homo sapiens UPF2 regulator of nonse... 43 0.001
AL138898-4|CAH73458.1| 1272|Homo sapiens UPF2 regulator of nonse... 43 0.001
AK000764-1|BAA91369.1| 250|Homo sapiens protein ( Homo sapiens ... 43 0.001
AF318574-1|AAG60689.1| 1272|Homo sapiens UPF2 protein. 43 0.001
AF301013-1|AAG33225.1| 1272|Homo sapiens regulator of nonsense t... 43 0.001
AB037829-1|BAA92646.1| 1298|Homo sapiens KIAA1408 protein protein. 43 0.001
>BC115737-1|AAI15738.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 59 DKQEMERVKRLTLNIXXXXXXXXXXXXXXXXXXXXXNPNRGQHVRQKYQHPKGAPDADLI 238
+++E R+K+LTL+I N + R +YQHPKGAP+ADLI
Sbjct: 1205 EQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLI 1264
Query: 239 F 241
F
Sbjct: 1265 F 1265
>BC114964-1|AAI14965.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 59 DKQEMERVKRLTLNIXXXXXXXXXXXXXXXXXXXXXNPNRGQHVRQKYQHPKGAPDADLI 238
+++E R+K+LTL+I N + R +YQHPKGAP+ADLI
Sbjct: 1205 EQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLI 1264
Query: 239 F 241
F
Sbjct: 1265 F 1265
>AY013249-1|AAG48509.1| 1272|Homo sapiens hUPF2 protein.
Length = 1272
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 59 DKQEMERVKRLTLNIXXXXXXXXXXXXXXXXXXXXXNPNRGQHVRQKYQHPKGAPDADLI 238
+++E R+K+LTL+I N + R +YQHPKGAP+ADLI
Sbjct: 1205 EQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLI 1264
Query: 239 F 241
F
Sbjct: 1265 F 1265
>AL645617-1|CAI16755.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 59 DKQEMERVKRLTLNIXXXXXXXXXXXXXXXXXXXXXNPNRGQHVRQKYQHPKGAPDADLI 238
+++E R+K+LTL+I N + R +YQHPKGAP+ADLI
Sbjct: 1205 EQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLI 1264
Query: 239 F 241
F
Sbjct: 1265 F 1265
>AL138898-4|CAH73458.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 59 DKQEMERVKRLTLNIXXXXXXXXXXXXXXXXXXXXXNPNRGQHVRQKYQHPKGAPDADLI 238
+++E R+K+LTL+I N + R +YQHPKGAP+ADLI
Sbjct: 1205 EQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLI 1264
Query: 239 F 241
F
Sbjct: 1265 F 1265
>AK000764-1|BAA91369.1| 250|Homo sapiens protein ( Homo sapiens
cDNA FLJ20757 fis, clone HEP01520. ).
Length = 250
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 59 DKQEMERVKRLTLNIXXXXXXXXXXXXXXXXXXXXXNPNRGQHVRQKYQHPKGAPDADLI 238
+++E R+K+LTL+I N + R +YQHPKGAP+ADLI
Sbjct: 183 EQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLI 242
Query: 239 F 241
F
Sbjct: 243 F 243
>AF318574-1|AAG60689.1| 1272|Homo sapiens UPF2 protein.
Length = 1272
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 59 DKQEMERVKRLTLNIXXXXXXXXXXXXXXXXXXXXXNPNRGQHVRQKYQHPKGAPDADLI 238
+++E R+K+LTL+I N + R +YQHPKGAP+ADLI
Sbjct: 1205 EQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLI 1264
Query: 239 F 241
F
Sbjct: 1265 F 1265
>AF301013-1|AAG33225.1| 1272|Homo sapiens regulator of nonsense
transcripts 2 protein.
Length = 1272
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 59 DKQEMERVKRLTLNIXXXXXXXXXXXXXXXXXXXXXNPNRGQHVRQKYQHPKGAPDADLI 238
+++E R+K+LTL+I N + R +YQHPKGAP+ADLI
Sbjct: 1205 EQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLI 1264
Query: 239 F 241
F
Sbjct: 1265 F 1265
>AB037829-1|BAA92646.1| 1298|Homo sapiens KIAA1408 protein protein.
Length = 1298
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 59 DKQEMERVKRLTLNIXXXXXXXXXXXXXXXXXXXXXNPNRGQHVRQKYQHPKGAPDADLI 238
+++E R+K+LTL+I N + R +YQHPKGAP+ADLI
Sbjct: 1231 EQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLI 1290
Query: 239 F 241
F
Sbjct: 1291 F 1291
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,045,705
Number of Sequences: 237096
Number of extensions: 1112154
Number of successful extensions: 1130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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