Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_N18
(966 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 36 0.043
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.93
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.93
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.93
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.1
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.8
Z81472-1|CAB03889.1| 173|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 3.7
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 3.7
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 5.0
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 5.0
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 5.0
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 5.0
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 5.0
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 28 8.7
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 28 8.7
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 35.9 bits (79), Expect = 0.043
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -3
Query: 373 FXPPXXXGGGXTPQKXFXXXGAPXPPPQXGXPPPP 269
F PP GG P G P PPP G PPP
Sbjct: 73 FIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107
Score = 34.7 bits (76), Expect = 0.100
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -3
Query: 367 PPXXXGGGXTPQKXFXXXGAPXPPPQXGXPPPP 269
PP GG P G P PPP G PPPP
Sbjct: 86 PPPMFAGGIPPPPPMMG-GIPPPPPMFGAPPPP 117
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.93
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 353 GGGXHTPKKXXXXGGPPXPPPXGXAPP 273
GG P GGPP PPP G PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPP 737
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 314 GGPPXPPPXGXAPP 273
GGPP PPP G PP
Sbjct: 740 GGPPPPPPPGGLPP 753
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -3
Query: 367 PPXXXGGGXTPQKXFXXXGAPXPPPQXGXPPPP 269
PP GG P P PPP G PPPP
Sbjct: 743 PPPPPPGGLPP---ISGGPPPPPPPPGGCPPPP 772
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 314 GGPPXPPPXGXAPPP 270
G PP PPP G PPP
Sbjct: 757 GPPPPPPPPGGCPPP 771
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.93
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 353 GGGXHTPKKXXXXGGPPXPPPXGXAPP 273
GG P GGPP PPP G PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPP 737
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 314 GGPPXPPPXGXAPP 273
GGPP PPP G PP
Sbjct: 740 GGPPPPPPPGGLPP 753
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -3
Query: 367 PPXXXGGGXTPQKXFXXXGAPXPPPQXGXPPPP 269
PP GG P P PPP G PPPP
Sbjct: 743 PPPPPPGGLPP---ISGGPPPPPPPPGGCPPPP 772
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 314 GGPPXPPPXGXAPPP 270
G PP PPP G PPP
Sbjct: 757 GPPPPPPPPGGCPPP 771
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.93
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 353 GGGXHTPKKXXXXGGPPXPPPXGXAPP 273
GG P GGPP PPP G PP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPP 320
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 314 GGPPXPPPXGXAPP 273
GGPP PPP G PP
Sbjct: 323 GGPPPPPPPGGLPP 336
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -3
Query: 367 PPXXXGGGXTPQKXFXXXGAPXPPPQXGXPPPP 269
PP GG P P PPP G PPPP
Sbjct: 326 PPPPPPGGLPP---ISGGPPPPPPPPGGCPPPP 355
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 314 GGPPXPPPXGXAPPP 270
G PP PPP G PPP
Sbjct: 340 GPPPPPPPPGGCPPP 354
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 313 GAPXPPPQXGXPPPP 269
G+P PPP G PPPP
Sbjct: 253 GSPPPPPAAGSPPPP 267
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 313 GAPXPPPQXGXPPPP 269
G+P PPP G PPPP
Sbjct: 278 GSPPPPPAGGSPPPP 292
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 367 PPXXXGGGXTPQKXFXXXGAPXPPPQXGXPPPP 269
PP G P + G+P PPP PPPP
Sbjct: 256 PPPPAAGSPPPPRT----GSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 313 GAPXPPPQXGXPPPP 269
G+P PPP G PPPP
Sbjct: 274 GSPPPPPAAGSPPPP 288
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 313 GAPXPPPQXGXPPPP 269
G+P PPP G PPPP
Sbjct: 299 GSPPPPPAGGSPPPP 313
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 367 PPXXXGGGXTPQKXFXXXGAPXPPPQXGXPPPP 269
PP G P + G+P PPP PPPP
Sbjct: 277 PPPPAAGSPPPPRT----GSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 313 GAPXPPPQXGXPPPP 269
G+P PPP G PPPP
Sbjct: 259 GSPPPPPAAGSPPPP 273
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 313 GAPXPPPQXGXPPPP 269
G+P PPP G PPPP
Sbjct: 284 GSPPPPPAGGSPPPP 298
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 367 PPXXXGGGXTPQKXFXXXGAPXPPPQXGXPPPP 269
PP G P + G+P PPP PPPP
Sbjct: 262 PPPPAAGSPPPPRT----GSPPPPPTGSPPPPP 290
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 341 HTPKKXXXXGGPPXPPPXGXAPPP 270
+ P G PP PPP G PPP
Sbjct: 705 NAPPPPGIPGYPPAPPPPGVGPPP 728
>Z81472-1|CAB03889.1| 173|Caenorhabditis elegans Hypothetical
protein C16D6.1 protein.
Length = 173
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 314 GGPPXPPPXGXAPP 273
GGPP PPP G PP
Sbjct: 67 GGPPGPPPHGPPPP 80
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 415 QKKTQXPQFSQKKNFXPPXXXGGGXTPQKXFXXXGAPXPPPQXGXPP 275
Q++ Q Q + ++ PP G P + G P PP Q PP
Sbjct: 657 QQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYYGGPPPPGQPYGPP 703
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 415 QKKTQXPQFSQKKNFXPPXXXGGGXTPQKXFXXXGAPXPPPQXGXPP 275
Q++ Q Q + ++ PP G P + G P PP Q PP
Sbjct: 657 QQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYYGGPPPPGQPYGPP 703
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 350 GGXHTPKKXXXXGGPPXPPPXGXAPPP 270
GG P GGP PPP G PPP
Sbjct: 775 GGRQAPMPPR--GGPGAPPPPGMRPPP 799
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 350 GGXHTPKKXXXXGGPPXPPPXGXAPPP 270
GG P GGP PPP G PPP
Sbjct: 775 GGRQAPMPPR--GGPGAPPPPGMRPPP 799
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -3
Query: 403 QXPQFSQKKNFXPPXXXGGGXTPQKXFXXXGAPXPP--PQXGXPPPP 269
Q ++ Q++ G P+ + G P PP PQ PPPP
Sbjct: 785 QQQRYHQQQQHQQQQQQGAPGGPRPPYPYPGGPVPPGPPQNRMPPPP 831
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 350 GGXHTPKKXXXXGGPPXPPPXGXAPPP 270
GG P GGP PPP G PPP
Sbjct: 775 GGRQAPMPPR--GGPGAPPPPGMRPPP 799
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = -3
Query: 394 QFSQKKNFXPPXXXGGGXTPQKXFXXXGAPXP--PPQXGXPPPP 269
QF PP GG PQ+ GAP P PQ G PP
Sbjct: 292 QFGGPPPSGPPSEYGGYAPPQQQQQQFGAPPPQGAPQQGFGAPP 335
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 350 GGXHTPKKXXXXGGPPXPPPXGXAPPP 270
GG P GGP PPP G PPP
Sbjct: 775 GGRQAPMPPR--GGPGAPPPPGMRPPP 799
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 314 GGPPXPPPXGXAPPP 270
GG P PPP G PPP
Sbjct: 787 GGIPPPPPLGIIPPP 801
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 314 GGPPXPPPXGXAPPP 270
GG P PPP G PPP
Sbjct: 787 GGIPPPPPLGIIPPP 801
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,952,581
Number of Sequences: 27780
Number of extensions: 155085
Number of successful extensions: 1574
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2500474882
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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