Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N17
         (1026 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    37   0.005
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.021
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.20 
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    29   0.80 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    24   6.4  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 735 PPPPPGGGXXXSPPPPPPXGGXXXKK 812
           PPPPPG      PPPPPP G    +K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 35.5 bits (78), Expect = 0.012
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 735 PPPPPGGGXXXSPPPPPPXGGXXXKK 812
           PPPPP G    S PPPPP  G   K+
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 30.3 bits (65), Expect = 0.46
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 186 PXGPPXPXPPPXGPRPXXPPP 248
           P  PP P PPP    P  PPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPP 26



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 186 PXGPPXPXPPPXGPRPXXPPP 248
           P G P P PPP G  P   PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP 25


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.021
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +3

Query: 735 PPPPPGGGXXXSPPPPPP 788
           PPPPPG      PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 34.3 bits (75), Expect = 0.028
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +3

Query: 735 PPPPPGGGXXXSPPPPPP 788
           PPPPP G     PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 31.5 bits (68), Expect = 0.20
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 735 PPPPPGGGXXXSPPPPPP 788
           PPPPP  G   + PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 30.3 bits (65), Expect = 0.46
 Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
 Frame = +3

Query: 192 GPPXPXPPPX----GPRPXXPPP 248
           GPP P PPP     GP P  PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.5 bits (63), Expect = 0.80
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 735 PPPPPGGGXXXSPPPPPPXG 794
           P PPP       PPPPPP G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 735 PPPPPGGGXXXSPPPPPPXGG 797
           PPP P  G    PPPPP   G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG 772



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 738 PPPPGGGXXXSPPPPPPXGG 797
           P PP       PPPPPP  G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 192 GPPXPXPPPXGPRPXXPPP 248
           G P P PPP G     PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
 Frame = +3

Query: 186 PXGPPXPXPPPX----GPRPXXPPP 248
           P   P P PPP     GP P  PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 25.4 bits (53), Expect(2) = 0.85
 Identities = 13/50 (26%), Positives = 13/50 (26%)
 Frame = +2

Query: 476 PPPPXPXXXXXXPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPPPPP 625
           PPPP        P P                            PPPPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 22.2 bits (45), Expect(2) = 0.85
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 605 PPPPPPPXXGG 637
           PPPPPP    G
Sbjct: 778 PPPPPPAVSAG 788


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 22/70 (31%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
 Frame = -2

Query: 329 PPXGGGXXGXRGAXXXXXXXXGPKXXXGGGXXG--AGAXGGGXGXGGAXGAXVXXXXXXX 156
           PP G G  G  G         G     GGG  G   G  G G G GG  G          
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259

Query: 155 XXXGGXGXGG 126
              GG G  G
Sbjct: 260 GFGGGPGGHG 269



 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -3

Query: 787 GGGGGGEXXXPP-PGGGGG 734
           GG GGG    PP PGG GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGG 209


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 263 PKXXXGGGXXGAGAXG-GGXGXGGAXGA 183
           P    GGG  GAG  G GG G GG  GA
Sbjct: 220 PMSLMGGGLGGAGLGGLGGAGLGGFGGA 247


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 735 PPPPPGGGXXXSPPPPPP 788
           P PPP  G   SPP  PP
Sbjct: 255 PIPPPSNGTVSSPPNSPP 272



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 18/64 (28%), Positives = 19/64 (29%)
 Frame = +3

Query: 597 KXXPPPPPPPXXGXXXSXXXXXXXXXXXXKXXXXXXXXXXXXXXXXPPPPPGGGXXXSPP 776
           K  PPPPPPP                                    P PP G     +PP
Sbjct: 308 KKRPPPPPPP--SRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG---RSAPP 362

Query: 777 PPPP 788
           PPPP
Sbjct: 363 PPPP 366


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.8 bits (49), Expect(2) = 6.4
 Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
 Frame = +3

Query: 735  PPPPPGGGXXXSPP--PPPP 788
            PPPP        PP  PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734



 Score = 20.6 bits (41), Expect(2) = 6.4
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 606  PPPPPPP 626
            P PPPPP
Sbjct: 1705 PTPPPPP 1711


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = -2

Query: 332 PPPXGGGXXGXRGAXXXXXXXXGPKXXXGGGXXGAGAXGGGXGXG 198
           PPP  G   G R          GP    GG   G G  GG  G G
Sbjct: 99  PPPPRGPLFGPRIGGGHHGPLHGPHGGFGG--RGGGRMGGRGGRG 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,081
Number of Sequences: 5004
Number of extensions: 20676
Number of successful extensions: 425
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)