Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N17
         (1026 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.63 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.63
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 605  PPPPPPPXXGGXXF 646
            PPPPPPP   G  +
Sbjct: 1355 PPPPPPPPSSGQAY 1368



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 771  PPPPPPXGG 797
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 605 PPPPPPPXXGG 637
           P PPPPP  GG
Sbjct: 374 PLPPPPPIRGG 384


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 597 KXXPPPPPPPXXG 635
           K  PPPPPP   G
Sbjct: 340 KPAPPPPPPSSSG 352



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 195 PPXPXPPPXGPRPXXP 242
           PP P PPP  P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 608 PPPPPPXXGG 637
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,692
Number of Sequences: 438
Number of extensions: 6191
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34225737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)