Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N15
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   5.7  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    26   7.5  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   7.5  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   10.0 
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   10.0 
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   10.0 
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    25   10.0 
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    25   10.0 

>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +3

Query: 162 LPLCNRILLDIISINHSLEKKTKMFGLRASVMKSAIIVPTMFSQQTRNTFILRRRWPPPL 341
           LP   R  L   ++N ++    K+ GLR SV  S  +       +T ++  ++    PP+
Sbjct: 182 LPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPI 241

Query: 342 HK 347
           +K
Sbjct: 242 YK 243


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 327 WPPPLHKKGGKVPKMKGRHFVYDLVEDTSVKKKPDIRIVLNQFVEGV 467
           W P L      V K  G  FVYD++   S  K   +  + N   E V
Sbjct: 279 WKPVLETNRLLVGKGNGNIFVYDIIWSESTSKAVLVATITNAHDEQV 325


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 423 KPDIRIVLNQFVEGVGTTGDVLTLHLNKAYENFILPG 533
           +P+  I+LN  ++   + G V    L+ +  NFI PG
Sbjct: 470 EPETGIILNDHMDDFASPGIVNAFGLSPSPYNFIAPG 506


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 387 VYDLVEDTSVKKKPDIRIVLNQFVEGV 467
           V DL+   ++K++P + I +N  V+G+
Sbjct: 87  VRDLIYQNALKQQPTLGIFMNPLVQGI 113


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -1

Query: 280 VGTIIADFITEARSPNIFVFF--SSEWLILIISNKILLHNGRKVSEEKIKNNTFQPQFSI 107
           +G  ++ FI +      +VF+  S+ W+I ++   ++L     VSE K + N      SI
Sbjct: 297 LGPSLSGFIVQYTPHMYYVFYITSTFWIIYLLYVWLILPESLDVSESKEQQNKISGFSSI 356

Query: 106 Y 104
           +
Sbjct: 357 W 357


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 702 PGISKLHFASQAS*FLRVLLKCPSANXGPXSNYSTKN 812
           PG+S+++F   A+ FL  + +C  +        S+KN
Sbjct: 580 PGVSRVYFPPDANCFLATVARCMKSENTINLMVSSKN 616


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 393 DLVEDTSVKKKPDIRIVLNQFVEGVGTTGDVLTLHLNKAYENFILPGLAVYANPENLEKY 572
           D+V D S+ +  D   ++     G+    DVL       ++N + PG  V  +P+ +  +
Sbjct: 17  DIVNDVSMTEMEDE--IMEDEQMGLVDGEDVLEEFDKSIHQNLVTPGQLVTDDPQFMRGH 74

Query: 573 KTY 581
            TY
Sbjct: 75  GTY 77


>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 731 TCEMKL*DARAVESMVQXAHCYTKY 657
           TC+ K+  AR  +  V+ AH Y++Y
Sbjct: 115 TCQFKIRYARYGDKKVKSAHLYSRY 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,507
Number of Sequences: 5004
Number of extensions: 65165
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)