Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_N14
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 29 0.64
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 29 0.64
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 28 2.0
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 2.6
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 3.4
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 4.5
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 4.5
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 26 6.0
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 7.9
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 29.5 bits (63), Expect = 0.64
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -2
Query: 405 RHWNEMSTLYVNTTGKMIKVACITPSGVGSSTLNGFSWYNFLNRTDATYT 256
R W+ T Y N + + +TP +ST N +W ++ A YT
Sbjct: 572 RAWDVFKTNYNNPVSSSLTGSVVTPFSAKTSTFNEVNWSTSPDQMVALYT 621
>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 29.5 bits (63), Expect = 0.64
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 435 LRSPHPRRWRHCLMQRH 485
L + PRRWR+C +QRH
Sbjct: 23 LSTSPPRRWRNCTLQRH 39
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 509 DDLLYSPEGQQPDYVAQEGSNEPFSPPSNQKRSKIR-KRAGSTYLPPPNQYTRYPSMPHN 685
DDL Y P +VA +G N P S + S+ R G L P+ R ++
Sbjct: 519 DDLKYLSPNSSPRFVASDGPNRPASNGRSSLFSRGRASNLGDVGLRLPSPSPRIHTIV-- 576
Query: 686 PYGAPMHTQL 715
P AP H +
Sbjct: 577 PNSAPEHPSI 586
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 339 ITPSGVGSSTLNGFSWYNFLNRTDATYTLLQHFPLVTSVLFYDYTKQES 193
+ P+ + SS N FS +FLN L FP+ ++ FY T+ S
Sbjct: 450 VIPNSLTSSVSN-FSVSSFLNNLKEDTEWLYTFPIGCNISFYSTTEMRS 497
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 506 LDDLLYSPEGQQPDYVAQEGSNEPFSPPSNQKRSKIRKRAGSTYLPP 646
+ DL S + + P +A E + P Q + + R+G TY+PP
Sbjct: 51 IPDLHKSNKIKTPTSLADEKKSHNELDPKAQIKKLMETRSGGTYIPP 97
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 26.6 bits (56), Expect = 4.5
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 461 APLLDATSPSPLRVDLDDLLYSPE--GQQPDYVAQEGSNEPFSPPSNQKRSKIRKRAGST 634
+P L AT+ L+ L Y P G Q + A + S P PS S I +R T
Sbjct: 204 SPSLSATNQLSSSDTLEPLQYPPSSFGSQRQFNASQDS--PKRSPSKGSWSSILRRPSLT 261
Query: 635 YLP 643
Y P
Sbjct: 262 YSP 264
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +2
Query: 581 SPPSNQKRSKIRKRAGSTYLPPPNQYTRYPSMPHN-PYGAPMHTQLYN 721
SPPS QKR + + PP R + PH Y P H N
Sbjct: 36 SPPSFQKRLSFSDFSTTRLFSPPFLSKRSNNSPHRFSYSPPQHPASIN 83
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 575 PFSPPSNQKRSKIRKRAGSTYLPPPN 652
PF+ N S + GS Y+PPPN
Sbjct: 54 PFALGPNASSSGTGRPIGSVYVPPPN 79
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 7.9
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +2
Query: 539 QPDYVAQEGSNEPFSPPSNQKRSKIRKRAGSTYL 640
+PD + +E ++ F+P ++K++K+ S ++
Sbjct: 395 EPDIIEEEDDSDEFNPSVSRKKAKLTSSQFSNWM 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,120
Number of Sequences: 5004
Number of extensions: 67353
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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