Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_N14
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1377 + 36764461-36765339 34 0.13
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 31 0.89
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 31 0.89
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.6
04_03_0773 + 19451697-19451872,19452460-19452532,19452757-19452960 29 3.6
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 29 4.8
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 29 4.8
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573... 28 8.3
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 28 8.3
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 28 8.3
>01_06_1377 + 36764461-36765339
Length = 292
Score = 34.3 bits (75), Expect = 0.13
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Frame = +2
Query: 482 SPSPL----RVDLDDLLYSPE-GQQPDYVAQEGSNEPFSPPSNQKRSKIRKRAGSTYLPP 646
SP PL R L DLL+S PD A P PS + + K+R R P
Sbjct: 96 SPKPLVGSARSPLRDLLFSTNPNPSPDSPASALITLPLLRPSGRPQGKLRIRLALRERSP 155
Query: 647 PNQYTRYPSMPHNPYGAP 700
P +YP +PY P
Sbjct: 156 PPPEPQYPPPSSSPYYFP 173
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 31.5 bits (68), Expect = 0.89
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Frame = +2
Query: 449 PEAVAPLLDATSPSPLRVDLDDLLYSPEGQQPDYVAQEGSNEPFSPPSNQKRSKIRKRAG 628
P AP T P P +P Q P ++ G+ PF PP Q +++ +
Sbjct: 237 PFGGAPQWPGTQPPPFGAQA-----APSSQPPPFMGVPGNAPPFRPPGWQGQARPGAMSA 291
Query: 629 STYLPP----PNQYTR----YPSMPHNPY-GAPMHT 709
L P PN + PSMP++P+ GA + T
Sbjct: 292 GMQLMPGGMLPNALGQGMPSTPSMPYSPHAGAQVST 327
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 31.5 bits (68), Expect = 0.89
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 527 PEGQQPDYVAQEGSNEPFSPPSNQKRSKIRKRAGSTYLPP 646
PEG+ D A+E ++E SPPS R + RKRA ++ PP
Sbjct: 195 PEGEASD--AEENASEE-SPPSPPTRGRRRKRAATSDPPP 231
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = +2
Query: 464 PLLDATSPSPLRVDLDDLLYSPEGQQPDYVAQEGSNEPFSPPSNQKRSKIRKRAGSTYLP 643
P ++ P P + + P+G P ++A P PP +Q + P
Sbjct: 23 PPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQP 82
Query: 644 PPNQYTRY-PSMPHNPYG 694
PP Y P P PYG
Sbjct: 83 PPPPQMYYQPPPPPPPYG 100
>04_03_0773 + 19451697-19451872,19452460-19452532,19452757-19452960
Length = 150
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = -1
Query: 364 RQDD*SRLHNTEWRGIVYTERVFMVQLFKSHRCHIHSASTLS 239
R D S W G+ T +Q F+ H C+ H +S
Sbjct: 41 RDGDGSEAEAARWMGLTATSFGLQIQFFRVHECNFHGEIIVS 82
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 605 SKIRKRAGSTYLPPPNQYTRYPSMPHNPYGAPMHTQL 715
S++ R G PP + R S+PH+ +G+P+H L
Sbjct: 195 SRLAVRGGGAARKPPT-FRRVYSVPHSLHGSPVHKAL 230
>01_03_0200 +
13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/58 (24%), Positives = 23/58 (39%)
Frame = +2
Query: 527 PEGQQPDYVAQEGSNEPFSPPSNQKRSKIRKRAGSTYLPPPNQYTRYPSMPHNPYGAP 700
P+ + D + + P PP K ++ +A +P P + P MP N P
Sbjct: 279 PQEHKKDIIFGNVAAAPKKPPRPPKHKPLKDKAEEPEIPKPTEGPSTPVMPQNEQEDP 336
>10_06_0130 - 11055305-11055593,11055666-11055949,11057271-11057398,
11058522-11058606,11058917-11060872
Length = 913
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = +2
Query: 464 PLLDATSPSPLRVDLDDLLYSPEGQQPDYVAQEGSNEPFSPPSNQKRSKIRKRAGSTYLP 643
PL T PL L L + G P Y+A GS E +PP R+ + ++P
Sbjct: 834 PLHIPTPVIPLEFLLIGTLAARRGAPPFYMAAWGSGESSAPPPTPLFPDPRRIIKNGHVP 893
Query: 644 PPNQYTRYPSMP 679
+ PS P
Sbjct: 894 AKTSGSGKPSRP 905
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 28.3 bits (60), Expect = 8.3
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Frame = +2
Query: 443 AAPEAVAPLLDATSPSPLRVDL-----DDLLYSP-EGQQPDYVAQEGSNEPFSPPSNQKR 604
AAP + A +L A PSP R + LL P G +P S+ S S
Sbjct: 27 AAPPSAAAVLPARPPSPPRASIPVSSSPPLLPPPVAGSKPQLPPFSSSSSVASSSSPPLP 86
Query: 605 SKIRKR-AGSTYLPPPNQYT 661
S + AG + PPPN T
Sbjct: 87 SSVSVAIAGDGFGPPPNTLT 106
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 626 GSTYLPPPNQYTRYPSMPHNPYGAPMHTQLYNQNSRLDXQXDHXRVQXVNTQFDNM 793
G T +PP + P PH + ++ +Y R+D D + + ++N+
Sbjct: 207 GITIIPPQTAFL--PQKPHATFNFTLNFPIYKVQDRIDELKDQMKTGLLLNSYENL 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,162,450
Number of Sequences: 37544
Number of extensions: 472202
Number of successful extensions: 1283
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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