Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_N12
(942 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.033
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.058
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.41
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.54
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 29 0.72
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 28 2.2
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 28 2.2
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 28 2.2
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 5.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.7
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 6.7
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb... 26 6.7
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 8.8
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 8.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.033
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 804 PPPGXXXGXPXPPXXPPGXGGPFPXXP 884
PPP G P PP PPG G P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 30.7 bits (66), Expect = 0.31
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +3
Query: 444 PPPWXXXGGGXAPLPFPRXXXPPPPGXXGXXXXXPPPP 557
PPP GG P PPPPG G PPPP
Sbjct: 752 PPPAPIMGGPPPP--------PPPPGVAGAGPPPPPPP 781
Score = 29.9 bits (64), Expect = 0.54
Identities = 21/63 (33%), Positives = 21/63 (33%)
Frame = +3
Query: 444 PPPWXXXGGGXAPLPFPRXXXPPPPGXXGXXXXXPPPPXRKTGXPXXXGGGGEXPPPPXX 623
PPP AP P P PP P G PPP G P PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIP--VPPPAPIMGGPPPPPPPPGVAGAGPPP------PPPPPPAV 785
Query: 624 GXG 632
G
Sbjct: 786 SAG 788
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +3
Query: 510 PPPGXXGXXXXXPPPPXRKTGXPXXXGGGGEXPPPPXXGXGXXPXXXXGP 659
PPP P P P GG PPPP G P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +2
Query: 491 SPXXXPPPPXGXGXXXXXPPPPXXENGXPP 580
+P PPP G PPPP PP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 804 PPPGXXXGXPXPPXXPP 854
PPPG P PP PP
Sbjct: 766 PPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Frame = +3
Query: 546 PPPPXRKTGXPXXXGGGGEXPPP-PXXGXGXXPXXXXGPXGXXXWXPPP 689
PPPP P PPP P G P G G PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.058
Identities = 40/182 (21%), Positives = 44/182 (24%), Gaps = 1/182 (0%)
Frame = +3
Query: 333 PPPXRXEKTXFSPPLGSXXGFXAXGRGGXFXXXXXGGPPPWXXXGGGXAPLPFP-RXXXP 509
PPP + PP+G+ G PPP G PLP R P
Sbjct: 313 PPPPPSRRNRGKPPIGN----------GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362
Query: 510 PPPGXXGXXXXXPPPPXRKTGXPXXXGGGGEXPPPPXXGXGXXPXXXXGPXGXXXWXPPP 689
PPP PPP + PPP G G P P
Sbjct: 363 PPPPRSAPSTGRQPPPLSSS----RAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418
Query: 690 XXXXXXPXXPXLGGXXXXXXXXXXXXXXXXXXXGGXAGPPPGXXXGXPXPPXXPPGXGGP 869
P P PP G P P PP P
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP--LPAGMPAAPPLPPAAPAP 476
Query: 870 FP 875
P
Sbjct: 477 PP 478
Score = 30.3 bits (65), Expect = 0.41
Identities = 29/146 (19%), Positives = 31/146 (21%)
Frame = +3
Query: 486 PFPRXXXPPPPGXXGXXXXXPPPPXRKTGXPXXXGGGGEXPPPPXXGXGXXPXXXXGPXG 665
P P PP G PP P + P PP
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310
Query: 666 XXXWXPPPXXXXXXPXXPXLGGXXXXXXXXXXXXXXXXXXXGGXAGPPPGXXXGXPXPPX 845
PPP P +G G PP G P PP
Sbjct: 311 PP---PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
Query: 846 XPPGXGGPFPXXPXXEXXXXXXFPPP 923
P G P PPP
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPPAPPP 393
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = +3
Query: 480 PLPFPRXXXPPPPGXXGXXXXXPPPPXRKTGXPXXXGGGGEXPPPPXXGXGXXP 641
P+P P P P G PP P + P G P P G P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +3
Query: 441 GPPPWXXXGGGXAPLPFPRXXXPPPPGXXGXXXXXPPPPXRKTGXPXXXGGGGEXPPP 614
G PP P+P P PP P PPP P G PPP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVP-KPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +3
Query: 441 GPPPWXXXGGGXAPLPFPRXXXPPPPGXXGXXXXXPPPPXRKTGXPXXXGGGGEXPPP 614
G PP P+P P PP P G PP P P G P P
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPVPAPSG----APPVPKPSVAAPPVPVPSGAPPVP 1143
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.54
Identities = 23/65 (35%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Frame = -3
Query: 613 GGGXSPPPPXXXGXPVFRXGGG-----GXXXXXPXXPGG--GGXXXRGKGRGAXXXXXXX 455
GGG PPP G F GG G PGG GG G G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 454 QGGGP 440
GGGP
Sbjct: 254 FGGGP 258
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.5 bits (63), Expect = 0.72
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 116 KXKKKRXKKKXKKXXKXKKXKK-KXXKKK 199
K ++KR KK+ KK K KK KK K KKK
Sbjct: 443 KKEEKRRKKEAKKEKKEKKEKKEKKEKKK 471
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 96 YLLRXKXXKKKKXKKKXKKXXKKXKKXKKKXXKKKXPXXKXKSP 227
Y+L + +KKK K ++ K+ K +++ KK+ P +P
Sbjct: 302 YVLNQRKEEKKKRAKDDEQYAKRLAKEEEERGKKETPKKASNTP 345
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.9 bits (59), Expect = 2.2
Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Frame = +3
Query: 444 PPPWXXXGGGXAPLP----FPRXXXPPPPGXXGXXXXXPPPP-XRKTG-----XPXXXGG 593
PPP G P P P PPPP PPPP + G P
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 281
Query: 594 GGEXPPPP 617
G PPPP
Sbjct: 282 GEHMPPPP 289
Score = 27.9 bits (59), Expect = 2.2
Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Frame = +3
Query: 444 PPPWXXXGGGXAPLP----FPRXXXPPPPGXXGXXXXXPPPP-XRKTG-----XPXXXGG 593
PPP G P P P PPPP PPPP + G P
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 320
Query: 594 GGEXPPPP 617
G PPPP
Sbjct: 321 GEHMPPPP 328
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Frame = +3
Query: 444 PPPWXXXGGGXAPLP----FPRXXXPPPPGXXGXXXXXPPPPXR 563
PPP G P P P PPPP PPPP +
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFK 343
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 129 KXKKKXKKXXKKXKKXKKKXXK 194
K KKK KK KK KK K+K K
Sbjct: 436 KKKKKKKKNNKKKKKNKRKNIK 457
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 136 KKKXKKXXKKXKKXKKKXXK 195
KKK KK KK KK K+K K
Sbjct: 438 KKKKKKNNKKKKKNKRKNIK 457
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -2
Query: 248 FLXPXXXGTFXFXXGXFFFXXFFFXFFXFFXXFFXFFF 135
F+ P F F+F F F F F F FFF
Sbjct: 96 FIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFF 133
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 199 FFFXXFFFXFFXFXXFFXFFFXSFFFXF 116
FFF FF F F F FF F +
Sbjct: 119 FFFFLLFFLSFSFSFSFLFFLSQIFIVY 146
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +3
Query: 606 PPPPXXGXGXXPXXXXGPXGXXXWXPPPXXXXXXPXXPXLG 728
PPPP P P G PPP P P G
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 110 KXKXKKKRXKKKXKKXXKXKKXKKKXXKKK 199
K K+++ KKK +K K K KKK + K
Sbjct: 136 KESSKREKSKKKKEKKEKKDKLKKKSKRLK 165
>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 102 LRXKXXKKKKXKKKXKKXXKKXKKXKKKXXKKKXP 206
L+ K KKK KKK K K +K ++ + K P
Sbjct: 8 LKLKNVKKKPLKKKKKDSKKLAEKVQEHSSRDKSP 42
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 111 KXXKKKKXKKKXKKXXKKXKKXKKKXXKKK 200
K KKKK K+ KK +K +KK K +
Sbjct: 176 KDKKKKKKSKENDDAPKKDRKTRKKEEKAR 205
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 185 FFFXFFXFFXXFFXFFFXFFFFXXFXTQ*IKKTCLNDNSLTTI 57
+FF + FF FFF F F F +N ++LTT+
Sbjct: 61 WFFIKMRYLSFFFEFFFLFSFAFAFDFDVTSDDSIN-SALTTV 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,708
Number of Sequences: 5004
Number of extensions: 26111
Number of successful extensions: 250
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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