Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N11
         (927 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.1  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = +1

Query: 385 GGGXGGFXXFKXPPPPXGXGXWFLXPXPXPPPXTP 489
           G G  G   ++   P  G G     P P   P TP
Sbjct: 101 GSGMDGMGGYRSASPSPGMGHMGHTPTPNGHPSTP 135


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 461 PXPXPPPXPP 490
           P P PPP PP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 467 PXPPPXPPXPXLSG 508
           P P P PP P  SG
Sbjct: 339 PKPAPPPPPPSSSG 352


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 736 GVPPXKXPXGPPPXSPP 786
           G PP     GPPP  PP
Sbjct: 37  GSPP-NPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 526 PPPGGXXXXPPN 561
           PPPGG    PP+
Sbjct: 46  PPPGGPPGAPPS 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,570
Number of Sequences: 438
Number of extensions: 8527
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)