Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_N09
(939 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.39
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.39
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.39
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 32 0.51
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 30 2.1
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 29 4.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.8
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 6.3
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 6.3
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.39
Identities = 27/105 (25%), Positives = 31/105 (29%), Gaps = 7/105 (6%)
Frame = +1
Query: 643 GFXPPQGGGXXVXPXXSGEXPXEKTFXXQRXPXXGPXPRKXG--PGXXGXFXXRXPXPPX 816
G P G G P +G P +T P P P G P P PP
Sbjct: 245 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 304
Query: 817 XGXXKKSAXPXXXGGXXPXGXFXXXP-----RXFPPXXXPPXGAP 936
S P GG P P + P PP G+P
Sbjct: 305 GSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 349
Score = 28.7 bits (61), Expect = 6.3
Identities = 31/126 (24%), Positives = 37/126 (29%), Gaps = 19/126 (15%)
Frame = +1
Query: 616 PGPFGXGXXGFXPPQGGGXXVXPXXSGEXPX---EKTFXXQRXPXXGPXPR--------- 759
P P G G PP G P +G P +K +R P G P
Sbjct: 301 PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 360
Query: 760 KXGPGXXGXFXXRXPXPPXXGXX-------KKSAXPXXXGGXXPXGXFXXXPRXFPPXXX 918
+ GPG P G +KS+ P G P PP
Sbjct: 361 RGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGS 420
Query: 919 PPXGAP 936
PP G P
Sbjct: 421 PPTGRP 426
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.39
Identities = 27/105 (25%), Positives = 31/105 (29%), Gaps = 7/105 (6%)
Frame = +1
Query: 643 GFXPPQGGGXXVXPXXSGEXPXEKTFXXQRXPXXGPXPRKXG--PGXXGXFXXRXPXPPX 816
G P G G P +G P +T P P P G P P PP
Sbjct: 266 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 325
Query: 817 XGXXKKSAXPXXXGGXXPXGXFXXXP-----RXFPPXXXPPXGAP 936
S P GG P P + P PP G+P
Sbjct: 326 GSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 370
Score = 28.7 bits (61), Expect = 6.3
Identities = 31/126 (24%), Positives = 37/126 (29%), Gaps = 19/126 (15%)
Frame = +1
Query: 616 PGPFGXGXXGFXPPQGGGXXVXPXXSGEXPX---EKTFXXQRXPXXGPXPR--------- 759
P P G G PP G P +G P +K +R P G P
Sbjct: 322 PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 381
Query: 760 KXGPGXXGXFXXRXPXPPXXGXX-------KKSAXPXXXGGXXPXGXFXXXPRXFPPXXX 918
+ GPG P G +KS+ P G P PP
Sbjct: 382 RGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGS 441
Query: 919 PPXGAP 936
PP G P
Sbjct: 442 PPTGRP 447
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.39
Identities = 27/105 (25%), Positives = 31/105 (29%), Gaps = 7/105 (6%)
Frame = +1
Query: 643 GFXPPQGGGXXVXPXXSGEXPXEKTFXXQRXPXXGPXPRKXG--PGXXGXFXXRXPXPPX 816
G P G G P +G P +T P P P G P P PP
Sbjct: 251 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 310
Query: 817 XGXXKKSAXPXXXGGXXPXGXFXXXP-----RXFPPXXXPPXGAP 936
S P GG P P + P PP G+P
Sbjct: 311 GSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSP 355
Score = 28.7 bits (61), Expect = 6.3
Identities = 31/126 (24%), Positives = 37/126 (29%), Gaps = 19/126 (15%)
Frame = +1
Query: 616 PGPFGXGXXGFXPPQGGGXXVXPXXSGEXPX---EKTFXXQRXPXXGPXPR--------- 759
P P G G PP G P +G P +K +R P G P
Sbjct: 307 PPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPP 366
Query: 760 KXGPGXXGXFXXRXPXPPXXGXX-------KKSAXPXXXGGXXPXGXFXXXPRXFPPXXX 918
+ GPG P G +KS+ P G P PP
Sbjct: 367 RGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGS 426
Query: 919 PPXGAP 936
PP G P
Sbjct: 427 PPTGRP 432
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 32.3 bits (70), Expect = 0.51
Identities = 27/87 (31%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Frame = +3
Query: 681 PXXXGGXXPGKNLXXPKGPXX-GPXTP*XGPGXGGXFXXKGPXPPXXGXXKKIGXPXXXG 857
P GG G + P GP P GG +G PP G G P G
Sbjct: 1531 PQRGGGPGMGPSQYYHDSPQNRGPPMGGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMG 1590
Query: 858 GXXPXRGLXKXXXGVSPPG-XXPXGGP 935
G P G+ PPG P GGP
Sbjct: 1591 GPPP-------RLGMPPPGPPPPNGGP 1610
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 30.3 bits (65), Expect = 2.1
Identities = 30/107 (28%), Positives = 30/107 (28%)
Frame = +1
Query: 616 PGPFGXGXXGFXPPQGGGXXVXPXXSGEXPXEKTFXXQRXPXXGPXPRKXGPGXXGXFXX 795
PGPFG PP GG P E P P P P PG
Sbjct: 182 PGPFGPSGA---PPSGGPPG--PFNPSEAPPSGGPTGPFDPSGAP-PSGGPPGPFNP-SG 234
Query: 796 RXPXPPXXGXXKKSAXPXXXGGXXPXGXFXXXPRXFPPXXXPPXGAP 936
P G S P G P P PP P GAP
Sbjct: 235 APPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAP 281
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 29.1 bits (62), Expect = 4.8
Identities = 23/81 (28%), Positives = 25/81 (30%)
Frame = +3
Query: 693 GGXXPGKNLXXPKGPXXGPXTP*XGPGXGGXFXXKGPXPPXXGXXKKIGXPXXXGGXXPX 872
G P N P P GP P P GG GP P G G P G
Sbjct: 172 GPAGPAGNAGPPGAPG-GPGAPGNTPS-GGAAGPPGPPGPPGGPGND-GQPGGPGNPGAP 228
Query: 873 RGLXKXXXGVSPPGXXPXGGP 935
+ + PPG GP
Sbjct: 229 GAVTEVPGQQGPPGPPGPAGP 249
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.8
Identities = 31/110 (28%), Positives = 34/110 (30%), Gaps = 4/110 (3%)
Frame = +1
Query: 616 PGPFGXGXXGFXPPQGGGXXVXPXXSGEXPXEKTFXXQRXPXX----GPXPRKXGPGXXG 783
P P F PP G P F + P GP P GPG G
Sbjct: 368 PPPVSSAPGNFAPPPQSGPP-----GAFAPPPSAFGAPQGPGGPGGYGPPP-PGGPGAPG 421
Query: 784 XFXXRXPXPPXXGXXKKSAXPXXXGGXXPXGXFXXXPRXFPPXXXPPXGA 933
+ PP G P GG G + P FPP PP GA
Sbjct: 422 SYG-----PPQGGPG--GFGPPPPGGP---GAYGPPPTGFPPVGAPPPGA 461
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 726 PKGPXXGPXTP*XGPGXGGXFXXKGPXPPXXGXXKKIGXP 845
P GP G P GPG GG GP P K G P
Sbjct: 618 PGGPGGGGGPP-RGPGGGGGGGPTGPPAPPKPPAKPRGRP 656
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = +3
Query: 726 PKGPXXGPXTP*XGPGXGGXFXXKGPXPPXXGXXKKIGXP 845
P GP G P GPG GG GP P K G P
Sbjct: 618 PGGPGGGGGPP-RGPGGGGGGGPTGPPAPPKPPAKPRGRP 656
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,782,548
Number of Sequences: 27780
Number of extensions: 140777
Number of successful extensions: 278
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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