Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N08
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   182   8e-47
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   6.1  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    26   8.1  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   8.1  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  182 bits (442), Expect = 8e-47
 Identities = 85/114 (74%), Positives = 98/114 (85%)
 Frame = +2

Query: 323 KIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKA 502
           KIRY+SL+DP  LD+ K+L+I+I P+K    L+I DTGIGMTK DL+NNLG IAKSGTK 
Sbjct: 45  KIRYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQ 104

Query: 503 FMEALQAGADISMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFT 664
           FMEA  +GADISMIGQFGVGFYS+YLVAD+V V SKHNDDEQY+WESSAGGSFT
Sbjct: 105 FMEAAASGADISMIGQFGVGFYSAYLVADKVQVVSKHNDDEQYIWESSAGGSFT 158



 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 34/42 (80%), Positives = 38/42 (90%)
 Frame = +1

Query: 193 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDAL 318
           +  ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDAL
Sbjct: 2   SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDAL 43


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -1

Query: 504 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 346
           KA++P F      +  +AL+ PI ++ I    +F+   IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 481 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 374
           DG   V  I  G     +DDR+  L+ + NDL+V L
Sbjct: 2   DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 676 SGRXCERASCRRFPHVLLVVIVFRVN 599
           SG   E A CR+FP V L  I+ ++N
Sbjct: 328 SGGTLETALCRQFPTVCLGKILVQIN 353


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 343 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 471
           H S K    +R+   D +  +ER H+  +R+R  YD G F + +
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,541
Number of Sequences: 5004
Number of extensions: 69151
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)