Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N07
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    34   0.031
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    31   0.22 
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    27   2.7  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    27   3.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.2  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    26   6.2  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   8.2  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    26   8.2  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +2

Query: 563 TASVIATGRRSVFLRLRRTTNSRPLQI---ILRXSARQAENSIHEKIRPLSQEYKRRSTL 733
           +A + A  RR +  +L +  NS+P+     +   S R +++S    I+P SQ+  R S +
Sbjct: 128 SARLWAEKRRFLLQKLGKDPNSKPIDYKSSMASSSTRSSQSSQVSAIQPQSQDDNRVSDI 187

Query: 734 RDSQTETEMNLLR 772
           R  +   E+N+ R
Sbjct: 188 RQMENRRELNVKR 200


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 375 RRHYGNVRKCRHKRAESTEEIEEKLRS*RVRQKRDEPSK 491
           R+H  NV   R  + E + EIE+K+R+ RVR+++  P +
Sbjct: 467 RKHARNVVDQRRLKVEKSLEIEKKMRAQRVRREQKLPEE 505


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 626 SRPLQIILRXSARQAENSIHEKIRPLSQEYKRRSTLRDSQTETEM 760
           S+PL   L+  + +  + ++EK+   S+  K++  L  S T+T M
Sbjct: 416 SKPLPERLQKDSMRRSSPLNEKVTASSERMKKKLALFASSTDTSM 460


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 367 PQPVAITAMYENVVIKEQNPRRKLRRSFGPNEFDRSEMSRVR 492
           P+P+ I+   +   +K+   RRKLR+S  PN       SR R
Sbjct: 42  PEPMDISMSPDEKNLKKSTVRRKLRKS-KPNSSSNQVSSRTR 82


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 328  VPVPTPRPSLKQRPQPVAITAMYENVVIKEQNPRRKLRRSFGPNEFD 468
            V VP P P+    P P A  A  + VV K  +P     +S  P +FD
Sbjct: 890  VAVPAPIPAPVAEPAPPAAPA--KEVVEKAPSPPATRPKSTTPQKFD 934


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 259 VXHYVDSKLSYSEYEENHNSLRVVPVP 339
           V +  + +LS  +Y+ NH+SL  VP P
Sbjct: 232 VQNPTNPRLSVEDYDANHSSLPPVPPP 258


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 331 PVPTPRPSLKQRPQPVA 381
           PVPTP P +K  P P +
Sbjct: 328 PVPTPAPPVKTSPHPAS 344


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 277 SKLSYSEYEENHNSLRVVPVPTPRP 351
           S LS S+Y   H   +  P P PRP
Sbjct: 284 SVLSPSDYFPQHRRFQSAPAPIPRP 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,938
Number of Sequences: 5004
Number of extensions: 50438
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)