Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N05
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    31   0.23 
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    28   1.6  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    28   2.1  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    28   2.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   2.8  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   8.6  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   8.6  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   8.6  

>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 19/80 (23%), Positives = 35/80 (43%)
 Frame = +3

Query: 279 LPQKLCDKCVMTLKMIYTFQKQVIKAEEEFRKLLRIQLDVKHELPDDTYSLKLENDLECY 458
           LP+ + +  + T + +  + + V+K  EEF K+  I     ++L    Y  K+E      
Sbjct: 15  LPESISESRLWTSEALVRYPEIVVKHHEEFLKVCDIISTFTYQLDASIYDEKVEGVPLKQ 74

Query: 459 ATQNDFGLNILPKDEDGADN 518
              N  GL +  ++  G  N
Sbjct: 75  VYANSIGLPVYAREHLGLPN 94


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 570 NSPPKKKKRQTCLHCQKVFFKRKVYEKHI 656
           N+PP+K K+  C  C + F + +  ++HI
Sbjct: 61  NAPPQKVKQYVCETCTRAFARLEHLKRHI 89


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 246 RQNSEMQEGDGLPQKLCDKCVMTLKMIYTFQKQVIKAEEEFRKLLRI 386
           R+   ++EG GLP K   K   T+K++YT +     AEE F+ L R+
Sbjct: 432 RETYTLEEGLGLPSKSIYK--KTIKLVYTSE----HAEEMFKALERM 472


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 297 DKCVMTLKMIYTFQKQVIKAEEEFRKLLRIQLDVKHELPDDTYSLKLENDL 449
           D+  MTLK I   +  V  + E+ +KLL     +KH+ P+    + +E +L
Sbjct: 123 DQYRMTLKSIRNIESSVQPSREKKQKLLDQIYALKHKDPESPRLVTMEQEL 173


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 305 CDDFKNDLHISKTSN 349
           CDDF+N LH S+ SN
Sbjct: 305 CDDFENSLHPSENSN 319


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 390 LDVKHELPDDTYSLKLENDLECYATQ 467
           LD + +LP++TY LK E  +  Y  Q
Sbjct: 352 LDTQTQLPENTYVLKEETSMVLYDEQ 377


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 591 KRQTCLHCQKVFFKRKVYEKHIGV 662
           +R TC +C +   K    E+H+G+
Sbjct: 86  RRDTCFYCSRKIIKCICNEEHVGI 109


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 354 LLLLVFEMCKSFLKSSHICHRVFEGGHLLPAFHYFVCKQLV 232
           LL+L  ++     +    C  V  GG ++PA  Y  CK+++
Sbjct: 266 LLVLTLQIMPDKEECFPACKLVAAGGEMVPANMYHTCKRVL 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,640
Number of Sequences: 5004
Number of extensions: 55162
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)