Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N05
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0050 - 9323946-9324143,9324161-9324163                           29   3.9  
03_03_0244 - 15772156-15773964,15774190-15774711                       29   6.9  
09_04_0168 - 15295442-15295477,15295478-15295552,15295660-152957...    28   9.1  

>11_03_0050 - 9323946-9324143,9324161-9324163
          Length = 66

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +3

Query: 408 LPDDTYSLKLENDLECYATQN----DFGLNILPKDEDGADNSNFSFLDSEFKDE 557
           LP +T   +++ND E +  ++    DF  N L ++ED  DN N S  ++  KD+
Sbjct: 6   LPSETPDDEVDNDFERWYNKSLLKMDFNENPLSEEEDFDDNDNMSGDNTGDKDD 59


>03_03_0244 - 15772156-15773964,15774190-15774711
          Length = 776

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
 Frame = +3

Query: 333 FQKQVIKAEEEFRKL---LRIQLDVKHELPDDTYSLK-LENDLECYATQNDFGLNILPKD 500
           ++K++ +A+EE ++L   L  + D K ++ ++T+ L+ L  +L  Y T+N         +
Sbjct: 363 WEKELQQAQEELQQLNMQLVSKTDAKSKIDENTHMLQILSKELAAY-TENKMSEEAGVIE 421

Query: 501 EDGADNS 521
           EDG+D +
Sbjct: 422 EDGSDEA 428


>09_04_0168 -
           15295442-15295477,15295478-15295552,15295660-15295722,
           15296095-15296319,15296421-15296562,15296678-15296839,
           15298148-15298320,15300352-15300882
          Length = 468

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
 Frame = -1

Query: 733 VRHCILLDFQNDFQSFISNVFFMHTPICF-----SYTFLLKN 623
           ++   + +F +D+Q F+++++  HTP  F     SY+FL+K+
Sbjct: 164 IKAAFIQEFGDDYQVFVTDLWTDHTPWPFNQLPRSYSFLVKH 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,783,227
Number of Sequences: 37544
Number of extensions: 278870
Number of successful extensions: 600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)