Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N05
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    28   0.14 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   5.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   5.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 585 KKKRQTCLHCQKVFFKRKVYEKHI 656
           ++K   CL CQK F ++ +Y+ H+
Sbjct: 58  EEKTYQCLLCQKAFDQKNLYQSHL 81


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 321 MIYTFQKQVIKAEEEFRKLLRIQLDV 398
           MIY +        E+FRKL+RI+ DV
Sbjct: 547 MIYIWFTTSGTISEKFRKLIRIEDDV 572


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 555 EFKIRNSPPKKKKRQTCLHCQKVFFKRKVYEKHI 656
           +F    +  + KK  +C +C+KV+      + HI
Sbjct: 3   QFHCAAAEGQAKKSFSCKYCEKVYVSLGALKMHI 36


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 265 CISLFCLQTTSFMVTTVI 212
           C+++ CL   SF+V+T++
Sbjct: 387 CLTVVCLAFWSFIVSTIL 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,153
Number of Sequences: 438
Number of extensions: 3396
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)