Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N04
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    27   4.5  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   6.0  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.0  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    26   6.0  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    26   7.9  
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    26   7.9  

>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 263 PMFAVSTFNLDLCTTSLFCNESNAYHIQFVTFFKRAVI 150
           P ++ +TF + LC      + +   HI FV F +  V+
Sbjct: 32  PTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFLRSTVL 69


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 196 FDSLQNNDVVHKSKLKVLTANIGTLLDLYGVEKGLDHF 309
           F+S   +D+  K K K   ++ G LLD   VE  L+ F
Sbjct: 514 FESFDIDDLCSKLKNKAKCSSSGVLLDERDVEAALNQF 551


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 30  SLRFEYWISKAVRLLVCFARV--INSNTIVFDLMSF 131
           SLR  YW+S  +  L+CF  +   N +T++   M F
Sbjct: 712 SLRKAYWLSTVIFPLLCFTVISAYNFSTMIRSSMQF 747


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 218 SLFCNESNAYHIQFVTFFKR-AVIFHKLKLKRHQIKHYRV*IDNTRETN 75
           S FC  S A+ + + T FKR A +     ++ H  K  +   DN    N
Sbjct: 23  SSFCATSRAFSVFYFTRFKRSAYVSAPFGIEPHDEKELKTIDDNVHSNN 71


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 248 STFNLDLCTTSLFCNESNAYHIQFVTFFKRAVIFHKLKLKR 126
           + +N DL + S FC+ SN Y    V+ F +   F    LK+
Sbjct: 175 AVYNYDLPSESTFCHPSNGY--TEVSTFNKPAYFGSKDLKQ 213


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 428 IFFSYXPDDRQSYRLRXGXLKTSCWR*YLNSSNVNSWDDLKWSR 297
           I   + P     +RLR G +    W  ++   +++S   L W+R
Sbjct: 85  ISLEHLPGQTDIFRLRQGHVGGQFWSVFVECPSLDSNSSLSWNR 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,566
Number of Sequences: 5004
Number of extensions: 73248
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)