Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_N04
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0035 - 14321699-14321751,14321800-14321914,14322136-143221... 33 0.29
08_01_0048 + 335868-336682,338382-340386 32 0.51
05_03_0635 - 16446805-16447716 30 2.1
04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103 29 3.6
09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022 29 4.8
06_03_1168 - 28114656-28114721,28114800-28114889,28115139-281168... 29 4.8
01_03_0306 + 14875755-14876822 29 4.8
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 29 4.8
03_05_0549 - 25444234-25446792 28 8.3
>10_08_0035 -
14321699-14321751,14321800-14321914,14322136-14322199,
14322221-14322238,14323433-14323524,14323580-14323601,
14324345-14324424,14324882-14325082
Length = 214
Score = 33.1 bits (72), Expect = 0.29
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 276 PVRRGKRSGPLQVIPGVDIRRVQILSPARSLQXP 377
P RRGK G + V+P + + +LSPA L P
Sbjct: 45 PARRGKSGGDVSVLPAALVHQFMLLSPALKLLYP 78
>08_01_0048 + 335868-336682,338382-340386
Length = 939
Score = 32.3 bits (70), Expect = 0.51
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 154 TALLKNVTNCIWYAFDSLQNNDVVHKSKLKVLTANIGTLLDLYGVEKGLDHFRSSQELTF 333
T L K V + I + FD V HK + + ++I + LD+ G + D Q+L
Sbjct: 206 TTLAKYVYDKIGHQFDCTAFVSVSHKPDITRILSSIQSKLDIGGTSQACD---DVQQL-I 261
Query: 334 DEFKYYLQHE 363
D+ + YL+HE
Sbjct: 262 DDIRAYLEHE 271
>05_03_0635 - 16446805-16447716
Length = 303
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 688 WPMEEPRASQSAASQRRPRQWTSCSATIPASEG--CR 584
W EE + A ++ PR WT+ S +P G CR
Sbjct: 23 WSPEEDEQLRGAVARHGPRNWTAISEEVPGRSGKSCR 59
>04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103
Length = 301
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -3
Query: 663 PSQRHPSADRGSGPVVPPRFLLRKGAGLPHIDWCRQR---LEPSQREDR 526
P P D G GP++PP + G+ +W RQ LE +R+++
Sbjct: 83 PFSPDPELDGGDGPILPPPAQMGAEEGILLREWRRQNAIVLEEKERKEK 131
>09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022
Length = 530
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 585 LHPSEAGIVAEQLVHCLGLRWDAADWEALGSSIGHFKWAAFL 710
L P E + +V C+ L W AA + +++ H +W F+
Sbjct: 418 LFPLEMRSAGQSVVVCVNLFWTAAVAQCFLAAMCHLRWGVFI 459
>06_03_1168 - 28114656-28114721,28114800-28114889,28115139-28116877,
28117146-28117227,28117794-28117865,28119412-28119453,
28120352-28120401,28121253-28121372,28121635-28121707,
28121828-28122100,28122413-28122517,28122730-28122859,
28123106-28123356,28123787-28123993,28124185-28124455,
28124808-28124914
Length = 1225
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 546 VQDADDTNRYVVVLHPSEAGIVAEQLV 626
+QD D+ NR + +L P+E +VA+ L+
Sbjct: 1109 IQDGDNLNRLLQLLDPAEGKLVAKDLI 1135
>01_03_0306 + 14875755-14876822
Length = 355
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 377 GXLKTSCWR*YLNSSNVNSWDDLKWSRPFSTPYRSSRVPMFAVSTFNLDLCTT 219
G + T+C+ S+NVNSW W ++PYR S A +TF + C T
Sbjct: 87 GSITTNCYNSSTGSANVNSW----WMDLSTSPYRFSD----AYNTFVVIGCNT 131
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = -3
Query: 654 RHPSADRGSGPVVPPRFLLRKGAGLPHIDWCRQRLEPSQREDRISLKSLKTESSPKTDLS 475
RHPSA+ G VPP ++ + +Q++ P + + R L+ L + K D+
Sbjct: 1058 RHPSAELVLGTEVPPLMVIFRTLPSSAKPATKQKVAPKKTDVRAILRPLTVINCQKKDIQ 1117
Query: 474 XKEET 460
+ T
Sbjct: 1118 LRFST 1122
>03_05_0549 - 25444234-25446792
Length = 852
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 503 RSRLRKPTCPLKRRRLRQTSQHTSL 429
R R+PTCPL +R LR T S+
Sbjct: 52 RDNGRRPTCPLTQRELRDTEVSPSV 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,657,825
Number of Sequences: 37544
Number of extensions: 510664
Number of successful extensions: 1552
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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