Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N04
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    32   0.60 
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    32   0.60 
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    32   0.60 
AC024765-2|AAF60523.3|  345|Caenorhabditis elegans Hypothetical ...    31   0.80 
U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized mu...    28   9.8  
AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L) prot...    28   9.8  

>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 510 LKTESSPKTDLSXKEETLTTDQPAHLA 430
           LK +SSP TD S  EE +T D P  +A
Sbjct: 486 LKNDSSPNTDTSSVEEKITRDDPPKMA 512


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 510 LKTESSPKTDLSXKEETLTTDQPAHLA 430
           LK +SSP TD S  EE +T D P  +A
Sbjct: 457 LKNDSSPNTDTSSVEEKITRDDPPKMA 483


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 510 LKTESSPKTDLSXKEETLTTDQPAHLA 430
           LK +SSP TD S  EE +T D P  +A
Sbjct: 486 LKNDSSPNTDTSSVEEKITRDDPPKMA 512


>AC024765-2|AAF60523.3|  345|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.6 protein.
          Length = 345

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = -1

Query: 491 RKPTCPLKRRRLRQTSQHTSLIFFSYXPDDRQSYRLRXGXLKTSCWR*YLNSSNVNSWDD 312
           R+PT P KR+RLR      ++I  SY  DD +S        K    R +L   NV ++ +
Sbjct: 267 RRPTVPTKRKRLRS----MNVIVESYPLDDEKSDGNSQKSAKIGKKRFFLTKKNVKTYSN 322

Query: 311 L 309
           L
Sbjct: 323 L 323


>U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized
           muscle protein 1,isoform a protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 516 KSLKTESSPKTDLSXKEETLTTDQPAHLAYFL 421
           ++L T S P T +S  ++   T++P H  YFL
Sbjct: 63  QNLCTRSKPTTFISQNQQKGMTEKPKHSEYFL 94


>AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L)
           protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 516 KSLKTESSPKTDLSXKEETLTTDQPAHLAYFL 421
           ++L T S P T +S  ++   T++P H  YFL
Sbjct: 63  QNLCTRSKPTTFISQNQQKGMTEKPKHSEYFL 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,248,617
Number of Sequences: 27780
Number of extensions: 426262
Number of successful extensions: 1218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)