Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N04
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    29   0.055
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   4.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.3  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 0.055
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 160 LLKNVTNCIWYAFDSLQNNDVVHKSKLKVLTANIGTLLDLYGVEKGLDHFRSSQEL 327
           L  NVT       D   NND+  K     ++A +  L DLY V+  LD +  S E+
Sbjct: 359 LFSNVTPKFPRNIDEYNNNDLDTKKWNNKISA-LRALNDLYNVKNTLDSYNGSMEI 413


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 660 WEALGSSIGHFKWAAFLAVLEAKYCCDQQLHS 755
           W A  ++IG  KW   L  LE   C  ++L+S
Sbjct: 58  WFAGSTNIGINKWRFLLQCLEDLDCSLRKLNS 89


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 400 LSSGXYEKKISEVCWLVCRK 459
           +SS  YE++ +E  W+V  K
Sbjct: 360 ISSNIYERQNNEYIWIVSNK 379


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 181 CIWYAFDSLQNNDVVHKSKLKVLTANIGTLLD 276
           C W+ F+  Q     HK   + ++   GT+ D
Sbjct: 605 CCWHCFNCTQYQIRDHKDVTQCISCRQGTVPD 636


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,430
Number of Sequences: 438
Number of extensions: 5359
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)