Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N03
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    29   0.66 
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    29   0.66 
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    29   1.2  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    29   1.2  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    27   3.5  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   6.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   8.2  
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    26   8.2  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +2

Query: 482 DQRPSPVRSCPQSDIQNHLQSMFYLLRPEETLKMAVKLESAHPGRTRYLVVVCRNEESAL 661
           DQ P  +  C + D  N L  +FYL R      + + ++  +P +T  +V        AL
Sbjct: 767 DQLPL-ILVCDRYDFVNDL--VFYLFRNNMFQFIEIYVQRINPSKTPQVV-------GAL 816

Query: 662 LGIDCNERTTVGLVLRVLADTSI 730
           L IDC+E     L++ V+    +
Sbjct: 817 LDIDCDEELVQNLLMSVVGQVPV 839


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 299 ALVTIRRSPSVQTPRKSDEADKSSDKVEDNANNRVNKSLNE 421
           AL+ +      + P K D+ +KSS KV+    N+V +SLNE
Sbjct: 22  ALLYLMNKNKKRKPEKKDDKEKSSKKVQ--KKNKVIESLNE 60


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 282 DANVVWHLSQFDVLQVCKHQENRMKQ-INQVTRSKTMPTTVSTKASMNAT 428
           D  V+    Q +++Q  KH+ +R+KQ  NQ  +SKT+ +  + +   N++
Sbjct: 231 DNPVISKAQQLELIQELKHEGSRLKQAANQKRKSKTVSSKNNFQRLQNSS 280


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +2

Query: 320 SPSVQ--TPRKSDEADKSSDKVEDNANNRVNKSLNECYFANKGSAVVLGGTERGCMDQRP 493
           SPSVQ  TP K     KSS    + A+  V+ S +  + +    A     T    +   P
Sbjct: 732 SPSVQNKTPTKYHRELKSSKDGHEQASPLVSSSPSGSFTSQISPAATTTATNLDAVSLSP 791

Query: 494 SPVRSCPQ-SDIQN 532
           S VR+  Q SDI N
Sbjct: 792 STVRTGSQISDIGN 805


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 278 ETLSRYTIHNHTNIENTYELIIGFNCMN 195
           ETL  YT+  H+  ++  + +I F+C+N
Sbjct: 185 ETLKLYTLEVHSKKKDVSDTLIQFSCVN 212


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 466 RTPQHHC*ALIREVAFIEAFVDTVVGIVFD 377
           R P+ +  AL R++AF EAFV  +  +  D
Sbjct: 55  RAPKEYVEALERQIAFFEAFVKKLAKVGSD 84


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 356  ADKSSDKVEDNANNRVNKSL 415
            AD SSD VE+NA+N    S+
Sbjct: 1422 ADNSSDNVEENADNLFQSSV 1441


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 763 QTLNPPSPSSFYGCVGQD 710
           Q + PP+ + F GCVGQD
Sbjct: 67  QYVLPPNSTVFAGCVGQD 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,465,071
Number of Sequences: 5004
Number of extensions: 69710
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)