Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N03
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF025472-2|AAB71074.2|  625|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF017812-1|AAB70559.1|  191|Caenorhabditis elegans histone H1.2 ...    28   7.7  
AF017811-1|AAB70666.1|  191|Caenorhabditis elegans histone H1.2 ...    28   7.7  
AC084197-3|AAN63427.1|  173|Caenorhabditis elegans Histone h1 li...    28   7.7  
AC084197-2|AAM44399.1|  241|Caenorhabditis elegans Histone h1 li...    28   7.7  

>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 364 FICFIRFSWCLHTWRTSNCDKCHTTLASTKHYQ 266
           + CF ++     TW TS C KC +T  S+ +++
Sbjct: 641 YSCFFKYIVIFTTWLTSGCCKCSSTAISSLYWR 673


>AF025472-2|AAB71074.2|  625|Caenorhabditis elegans Hypothetical
           protein ZK250.5a protein.
          Length = 625

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 530 NHLQSMFYLLRPEETLKMAVKLESAHPGRTRYLVVVCRN 646
           NH  S++Y+L   +TL    K      G   Y+ VVC +
Sbjct: 40  NHSNSIYYMLSKNDTLIDKTKYNKRLVGDKNYIDVVCED 78


>AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical
           protein ZK250.5b protein.
          Length = 832

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 530 NHLQSMFYLLRPEETLKMAVKLESAHPGRTRYLVVVCRN 646
           NH  S++Y+L   +TL    K      G   Y+ VVC +
Sbjct: 247 NHSNSIYYMLSKNDTLIDKTKYNKRLVGDKNYIDVVCED 285


>AF017812-1|AAB70559.1|  191|Caenorhabditis elegans histone H1.2
           protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 296 MALVTIRRSPSVQTPRKSDEADKSSDKVEDNA 391
           M+ VT+  +P+V+TP K+ +A KS    E  A
Sbjct: 1   MSDVTVAETPAVKTPTKAPKAPKSKTTKEPKA 32


>AF017811-1|AAB70666.1|  191|Caenorhabditis elegans histone H1.2
           protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 296 MALVTIRRSPSVQTPRKSDEADKSSDKVEDNA 391
           M+ VT+  +P+V+TP K+ +A KS    E  A
Sbjct: 1   MSDVTVAETPAVKTPTKAPKAPKSKTTKEPKA 32


>AC084197-3|AAN63427.1|  173|Caenorhabditis elegans Histone h1 like
           protein 2, isoformb protein.
          Length = 173

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 296 MALVTIRRSPSVQTPRKSDEADKSSDKVEDNA 391
           M+ VT+  +P+V+TP K+ +A KS    E  A
Sbjct: 51  MSDVTVAETPAVKTPTKAPKAPKSKTTKEPKA 82


>AC084197-2|AAM44399.1|  241|Caenorhabditis elegans Histone h1 like
           protein 2, isoforma protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 296 MALVTIRRSPSVQTPRKSDEADKSSDKVEDNA 391
           M+ VT+  +P+V+TP K+ +A KS    E  A
Sbjct: 51  MSDVTVAETPAVKTPTKAPKAPKSKTTKEPKA 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,336,630
Number of Sequences: 27780
Number of extensions: 407178
Number of successful extensions: 1068
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)