Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N03
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 541 LKVILYVRLGT*ANWGWSLIHAAALRTP 458
           +K++  V L +   +GW+L  A  ++TP
Sbjct: 1   MKLLFLVLLSSLVTFGWTLEDAPRVKTP 28


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 541 LKVILYVRLGT*ANWGWSLIHAAALRTP 458
           +K++  V L +   +GW+L  A  ++TP
Sbjct: 1   MKLLFLVLLSSLVTFGWTLEDAPRVKTP 28


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 817 DHMACTETGXNICCWLHTQTLNPPSPSS 734
           D     +TG N+  W       PP PS+
Sbjct: 743 DQSTVIQTGANVNLWQPLSVSIPPPPSA 770


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,104
Number of Sequences: 438
Number of extensions: 4501
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)