Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_N02
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 40 6e-04
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 39 0.001
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 37 0.003
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 34 0.030
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 33 0.070
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 32 0.12
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 31 0.21
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 30 0.49
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 28 2.0
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 27 2.6
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.6
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.6
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 26 6.1
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 8.0
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 39.5 bits (88), Expect = 6e-04
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Frame = +1
Query: 397 FQWLLLLSCGAVYAVCALSTTTLS--FVLPATK--NDFELSSSDKGRLTATPLIGMCVGS 564
F+ L ++C VY+ AL +T S F +PA F +S + L G G
Sbjct: 130 FRKKLKITC--VYSYVALCSTFASSVFSVPAEAITTIFHISLTVSLLTMTVFLCGYIAGP 187
Query: 565 YFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIGATGLIFPY 744
W L++ GRK +V + + CRFFSGF ++
Sbjct: 188 IVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMCRFFSGFFASAPLTVVAAA 247
Query: 745 FGDFLSLRH 771
F D S +H
Sbjct: 248 FADMYSNKH 256
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/97 (20%), Positives = 35/97 (36%)
Frame = +1
Query: 541 LIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIG 720
++G C+G W +++ GRK + Q + CRFF G+G
Sbjct: 184 MLGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRFFGGYGACV 243
Query: 721 ATGLIFPYFGDFLSLRHXDVMLCRLXVFWTVGTILLP 831
++ F D R+ + VG ++ P
Sbjct: 244 PLCVVAAAFADMYPNRYRGTAITIFAAVIFVGPLVAP 280
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 37.1 bits (82), Expect = 0.003
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
Frame = +1
Query: 397 FQWLLLLSCGAVYAVCALSTTTLSFVLPATK--NDFELSSSDKGRLTATPLIGMCVGSYF 570
F+ L +C Y S + F +PA F +S + L+G C G
Sbjct: 131 FKRKLKTTCILAYVALCSSFASSVFAVPAEAITTVFHISLTVSLLTMTVFLLGYCSGPII 190
Query: 571 WGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGF 708
W L++ GRK +V + + CRFF+GF
Sbjct: 191 WAPLSELSGRKPPILIGMLGFGIFNISVAVGKDIQTIMMCRFFAGF 236
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 33.9 bits (74), Expect = 0.030
Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 3/155 (1%)
Frame = +1
Query: 370 ALHHAGYGCFQWLLLLSCGAVYA---VCALSTTTLSFVLPATKNDFELSSSDKGRLTATP 540
A++ G+G +QW L G + + + T+ + L + LT +
Sbjct: 68 AMNEIGFGRYQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQ 127
Query: 541 LIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIG 720
+G+ VG+ W AD GR+ + +F+ FG+ G
Sbjct: 128 NLGLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNFASICVFDALWSFGVGG 187
Query: 721 ATGLIFPYFGDFLSLRHXDVMLCRLXVFWTVGTIL 825
+ F + L H +L + +W +G ++
Sbjct: 188 NLPVDSAIFLEALPSSH-QWLLTVMSFWWAIGQVI 221
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 32.7 bits (71), Expect = 0.070
Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 4/149 (2%)
Frame = +1
Query: 403 WLLLLSCGAVYAVCALSTTTLS---FVLPATKNDFELSSSDKGRLTATPLIGMCVGSYFW 573
W+L + G + T +S V+ + EL++ K +T+ +G +G
Sbjct: 88 WVLAFAAGIGGLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIA 147
Query: 574 GNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIGATGLIFP-YFG 750
G LAD GRK + RF G+G +G LI P Y
Sbjct: 148 GALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWG-VGIASLIIPLYLS 206
Query: 751 DFLSLRHXDVMLCRLXVFWTVGTILLPGI 837
+ + ++ + T G ++ GI
Sbjct: 207 EIAPSKIRGRLVIIYVLLITAGQVIAYGI 235
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/95 (20%), Positives = 31/95 (32%)
Frame = +1
Query: 547 GMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIGAT 726
G G W +++ GRK +V + + CRFFSGF
Sbjct: 145 GFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDVQTVMICRFFSGFCASSPL 204
Query: 727 GLIFPYFGDFLSLRHXDVMLCRLXVFWTVGTILLP 831
++ F D + +C G ++ P
Sbjct: 205 SVVAAAFADMFDNKTRGPAVCIFACITFAGPLIGP 239
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 31.1 bits (67), Expect = 0.21
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 786 QHHVXVPQRQ-KVTEVREDEARGSDDSEPGEEPASQEPREGLHNAGQERGQSIQK*SSND 610
+H+ VP ++ K V+E+E D+S E P +EP A E S+ + +D
Sbjct: 127 EHNESVPAKKVKKNTVKEEEIEKDDESATTETPVKEEPTGEETEADHEEKASVDHGNFSD 186
Query: 609 GDLSASS 589
S +S
Sbjct: 187 KTTSEAS 193
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 786 QHHVXVPQRQKVTEVREDEARGSDDSEPGEEPASQEPREGLH-NAGQERGQSI 631
+ H + ++ +++ +E G+DD + G+EP +E GL N+ QE+ ++
Sbjct: 668 KRHFSLRHKKNASQITNNENNGNDDIKKGDEP--EEEHVGLRKNSTQEKNANL 718
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 388 YGCFQW--LLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSSDKGRLTATPLIGMCVG 561
YG +++ + + G + + + T L + LPA + F ++ L+A P IG +
Sbjct: 103 YGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVITNLLSAVPFIGDDLV 162
Query: 562 SYFWGNLA 585
WG +
Sbjct: 163 HLLWGGFS 170
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 27.5 bits (58), Expect = 2.6
Identities = 27/129 (20%), Positives = 45/129 (34%)
Frame = +1
Query: 445 ALSTTTLSFVLPATKNDFELSSSDKGRLTATPLIGMCVGSYFWGNLADARGRKXXXXXXX 624
AL T ++ +P + + SS TA L + F G +++ GRK
Sbjct: 104 ALDQTVITTAIPTIVANLDGGSSYSWIGTAYTLAQTSILP-FCGIMSEVVGRKIVLYTSI 162
Query: 625 XXXXXXXXXSSVVQSFSGFLACRFFSGFGIIGATGLIFPYFGDFLSLRHXDVMLCRLXVF 804
Q+ + CR G G G T L+ D L+ + V
Sbjct: 163 VLFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGITSLVTIVIADITPLQTRPYYTGCMGVT 222
Query: 805 WTVGTILLP 831
W + +++ P
Sbjct: 223 WGLASVMGP 231
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 667 SFSGFLACRFFSGFGIIGATGLIFPYFGDFLSLRHXDVML-CRLXVFWTVGTI 822
S SGF+A RFF+G I G ++P F + S + D L R+ ++T I
Sbjct: 255 SASGFIALRFFNGLAIAG----MWPGFAFYTSRFYRDQHLGKRIGWYYTAAQI 303
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 26.6 bits (56), Expect = 4.6
Identities = 27/131 (20%), Positives = 45/131 (34%)
Frame = +1
Query: 439 VCALSTTTLSFVLPATKNDFELSSSDKGRLTATPLIGMCVGSYFWGNLADARGRKXXXXX 618
+ AL T ++ +P + + SS TA L + F G +++ GRK
Sbjct: 102 LAALDQTVITTAIPTIVANLDGGSSYSWIGTAYSLAETSILP-FCGIMSEVVGRKIVLYT 160
Query: 619 XXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIGATGLIFPYFGDFLSLRHXDVMLCRLX 798
Q+ + CR G G G L+ D L+ +
Sbjct: 161 SIVLFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGIMSLVTIVIADITPLQTRPYYTGCMG 220
Query: 799 VFWTVGTILLP 831
V W V +++ P
Sbjct: 221 VTWGVASVMGP 231
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 702 GEEPASQEPREGLHNAGQERGQSIQK*SSNDGDLSASSVRQVT 574
G +P+S + E N ER +S N G +S++S + T
Sbjct: 538 GTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFT 580
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 633 CSGRVPVQRCAVLLWVPGLQVLLRVRNHRSH 725
C+ + C +LLW LQ L R+ R H
Sbjct: 348 CTYMAAMPACVILLWFEPLQCWLYKRDKRKH 378
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -1
Query: 423 AGQQQQPLEASV 388
AGQQQQPL+AS+
Sbjct: 624 AGQQQQPLQASI 635
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,236
Number of Sequences: 5004
Number of extensions: 61587
Number of successful extensions: 220
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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