Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_N02
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22175-2|CAA80131.2| 520|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z11115-20|CAA77460.2| 520|Caenorhabditis elegans Hypothetical p... 60 2e-09
AL110498-3|CAB54470.1| 846|Caenorhabditis elegans Hypothetical ... 35 0.066
Z68296-1|CAA92589.2| 520|Caenorhabditis elegans Hypothetical pr... 34 0.11
AC006638-8|AAK85487.2| 644|Caenorhabditis elegans Hypothetical ... 33 0.20
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr... 33 0.27
AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical... 33 0.27
U23453-2|AAV58891.1| 464|Caenorhabditis elegans Hypothetical pr... 31 1.1
U23453-1|AAP86622.1| 484|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia t... 31 1.4
Z70284-14|CAA94285.4| 422|Caenorhabditis elegans Hypothetical p... 30 2.5
AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical ... 30 2.5
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 29 4.3
AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical... 29 4.3
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 29 5.7
AF003138-5|AAL77178.1| 488|Caenorhabditis elegans Hypothetical ... 29 5.7
AF003138-3|AAM15568.1| 504|Caenorhabditis elegans Hypothetical ... 29 5.7
AF003138-2|AAM15567.1| 546|Caenorhabditis elegans Hypothetical ... 29 5.7
Z81094-3|CAB03151.1| 477|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z71265-1|CAA95832.1| 445|Caenorhabditis elegans Hypothetical pr... 28 7.5
U40802-6|AAV28320.1| 330|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical pr... 28 10.0
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 28 10.0
>Z22175-2|CAA80131.2| 520|Caenorhabditis elegans Hypothetical
protein ZK637.1 protein.
Length = 520
Score = 60.5 bits (140), Expect = 2e-09
Identities = 42/170 (24%), Positives = 68/170 (40%)
Frame = +1
Query: 334 SKDRVQRAPFETALHHAGYGCFQWLLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSS 513
S D + + A+ G+G FQ L + G + A+ LS + PA ++ +SS
Sbjct: 60 SPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSV 119
Query: 514 DKGRLTATPLIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACR 693
+ +T GM + S FWG + D GR+ S + F L R
Sbjct: 120 QQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFR 179
Query: 694 FFSGFGIIGATGLIFPYFGDFLSLRHXDVMLCRLXVFWTVGTILLPGIAF 843
+GFGI G + Y +FL + + FW +G + +A+
Sbjct: 180 GLTGFGIGGVPQSVTLY-AEFLPTAQRAKCVVLIESFWAIGAVFEALLAY 228
>Z11115-20|CAA77460.2| 520|Caenorhabditis elegans Hypothetical
protein ZK637.1 protein.
Length = 520
Score = 60.5 bits (140), Expect = 2e-09
Identities = 42/170 (24%), Positives = 68/170 (40%)
Frame = +1
Query: 334 SKDRVQRAPFETALHHAGYGCFQWLLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSS 513
S D + + A+ G+G FQ L + G + A+ LS + PA ++ +SS
Sbjct: 60 SPDSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSV 119
Query: 514 DKGRLTATPLIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACR 693
+ +T GM + S FWG + D GR+ S + F L R
Sbjct: 120 QQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFR 179
Query: 694 FFSGFGIIGATGLIFPYFGDFLSLRHXDVMLCRLXVFWTVGTILLPGIAF 843
+GFGI G + Y +FL + + FW +G + +A+
Sbjct: 180 GLTGFGIGGVPQSVTLY-AEFLPTAQRAKCVVLIESFWAIGAVFEALLAY 228
>AL110498-3|CAB54470.1| 846|Caenorhabditis elegans Hypothetical
protein Y64G10A.6 protein.
Length = 846
Score = 35.1 bits (77), Expect = 0.066
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = -1
Query: 810 GPKHLEPAQHHVXVPQRQKVTEVREDEARGSD-DSEPGEEPASQE-PREGLHNAGQERGQ 637
GP H+EP + V P + + E EDE D DS G+ +E R +H
Sbjct: 737 GPIHVEPTEPEVLEPAEEPMEEAEEDEEDEDDVDSVEGQTARIEELQRLIVHKDMNHDSG 796
Query: 636 SIQK*SSNDGDLSASSVRQVTPEVRADAHSDERR 535
++ + D SA ++ + R +A D R+
Sbjct: 797 NLDSAYVSGSDFSADIHNEILDKPRLNAEMDLRK 830
>Z68296-1|CAA92589.2| 520|Caenorhabditis elegans Hypothetical
protein C46C2.2 protein.
Length = 520
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = +1
Query: 544 IGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIGA 723
+G+ +G+ G +AD GRK S+ S + F R +G GI G
Sbjct: 117 VGVLIGNIILGYVADQIGRKKTFILSMLIGIPSLSLSATFNSIAAFYIFRALTGIGIAGT 176
Query: 724 TGLIFPYFGDFLS 762
+ + YF + +S
Sbjct: 177 MIVGWAYFSELVS 189
>AC006638-8|AAK85487.2| 644|Caenorhabditis elegans Hypothetical
protein F41G4.7 protein.
Length = 644
Score = 33.5 bits (73), Expect = 0.20
Identities = 28/97 (28%), Positives = 40/97 (41%)
Frame = -2
Query: 734 MRPVAPMIPNPEKNLQARNPEKDCTTLDRNAARASKSRAPMMAIFRPRASAKLPQKYEPT 555
MR +P N RNP +D++ A + M+ RA +LP YE +
Sbjct: 98 MRTFSPEAARSSSNSSDRNPR-----MDQDFELAMELACEEMSAIHARA--QLPMNYEAS 150
Query: 554 HIPMSGVAVRRPLSEDDSSKSFLVAGSTKLSVVVLSA 444
H P +P SE D KS AGS ++ + A
Sbjct: 151 HPP------EQPSSESDEDKSVSSAGSGSITTAAVLA 181
>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical
protein F40F11.2b protein.
Length = 1607
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -2
Query: 842 NAIPGNSIVPTVQNTXSLHSITSXCLNDRKSPK*GKMRPVAPMIPNPEKNLQARNPE 672
N PGNSI+ +QN S+ S S + K K P +PN KNL A+N +
Sbjct: 308 NDAPGNSILSQIQNLTSIGSSASSSAQPSQPAK--KAAPKRKTVPNTAKNL-AQNQQ 361
>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical
protein F40F11.2a protein.
Length = 1593
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -2
Query: 842 NAIPGNSIVPTVQNTXSLHSITSXCLNDRKSPK*GKMRPVAPMIPNPEKNLQARNPE 672
N PGNSI+ +QN S+ S S + K K P +PN KNL A+N +
Sbjct: 294 NDAPGNSILSQIQNLTSIGSSASSSAQPSQPAK--KAAPKRKTVPNTAKNL-AQNQQ 347
>AL161712-10|CAC35900.1| 533|Caenorhabditis elegans Hypothetical
protein Y66D12A.13 protein.
Length = 533
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = +1
Query: 529 TATPLIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGF 708
T + +IG+ +GS G L+D GRK SS S F+ RFF G
Sbjct: 118 TTSQMIGIMLGSAIAGQLSDLYGRKKITLLFLCMMLFFSTSSSFSSSIEVFIIVRFFIGI 177
Query: 709 GIIGAT 726
G T
Sbjct: 178 CCGGLT 183
>U23453-2|AAV58891.1| 464|Caenorhabditis elegans Hypothetical
protein B0252.3c protein.
Length = 464
Score = 31.1 bits (67), Expect = 1.1
Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 13/157 (8%)
Frame = +1
Query: 412 LLSCGAVYAVCALSTTTLSFVLPATKNDFELSSSDKGRLTATP-----------LIGMCV 558
+L CG ++ A + SFV+ A++N + +D+ LT ++G +
Sbjct: 27 ILVCGLAWSPLAFTGLCPSFVVKASENSSFIGVADEFDLTGDASWLAESTTTFYMVGNMI 86
Query: 559 GSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSG--FGIIGATGL 732
G F LAD GR S+ S F R G + G G
Sbjct: 87 GGMFIPPLADHYGRLPVFVATVLLMAVGGMISAFSTSIMMFCIMRMIHGIFYTAAGLAGW 146
Query: 733 IFPYFGDFLSLRHXDVMLCRLXVFWTVGTILLPGIAF 843
+ Y L LR + V W VG L +A+
Sbjct: 147 VLGYENTPLRLRFFTSVY--FGVMWVVGACFLGLLAY 181
>U23453-1|AAP86622.1| 484|Caenorhabditis elegans Hypothetical
protein B0252.3b protein.
Length = 484
Score = 31.1 bits (67), Expect = 1.1
Identities = 37/157 (23%), Positives = 56/157 (35%), Gaps = 13/157 (8%)
Frame = +1
Query: 412 LLSCGAVYAVCALSTTTLSFVLPATKNDFELSSSDKGRLTATP-----------LIGMCV 558
+L CG ++ A + SFV+ A++N + +D+ LT ++G +
Sbjct: 47 ILVCGLAWSPLAFTGLCPSFVVKASENSSFIGVADEFDLTGDASWLAESTTTFYMVGNMI 106
Query: 559 GSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSG--FGIIGATGL 732
G F LAD GR S+ S F R G + G G
Sbjct: 107 GGMFIPPLADHYGRLPVFVATVLLMAVGGMISAFSTSIMMFCIMRMIHGIFYTAAGLAGW 166
Query: 733 IFPYFGDFLSLRHXDVMLCRLXVFWTVGTILLPGIAF 843
+ Y L LR + V W VG L +A+
Sbjct: 167 VLGYENTPLRLRFFTSVY--FGVMWVVGACFLGLLAY 201
>AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia
telangectasia mutated)family protein 1 protein.
Length = 649
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 253 YHTKIVFLVTAAIHSVCLSALSHLY*LTECKILKL*FDSRTIF*RHLSRSECRVSTER 80
++ KI+ V +HSVC+ LS L E + ++ + T F + + S CR S R
Sbjct: 3 HYKKIIHQVLLKLHSVCIGQLSKLEEYRETRTYRMKQQAVTAFEQQIQNS-CRTSLAR 59
>Z70284-14|CAA94285.4| 422|Caenorhabditis elegans Hypothetical
protein K07F5.14 protein.
Length = 422
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -1
Query: 834 PWQ*YSSHGPKHLE--PAQHHVXVPQRQKVTEVREDEARGSDDSEPGEEPASQEPREGLH 661
P+ + P+HLE A PQ+ K TE + + S+ G+E ++++ +E +
Sbjct: 190 PFTRFDPENPEHLEWMKAFEASKNPQKVKKTEESTNSDEDGNGSDEGDEDSTEKKKEEVV 249
Query: 660 NAGQERG-QSIQK 625
+E G +S +K
Sbjct: 250 EKDEESGDESFEK 262
>AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical
protein F13C5.2 protein.
Length = 374
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = -1
Query: 771 VPQRQKVTEVREDEARGSDDSEPGEEPASQEPREGLHNAGQERGQSIQK*SSNDGDLSAS 592
V +++K EV+ED A + +P EEP + +E + + Q + S + L
Sbjct: 249 VDEKEKEEEVKEDNA----EEKPAEEPEQPDEKEEEDHEDEREEQEEEDSSDEEDGLDDD 304
Query: 591 SVRQVTP 571
VR+ P
Sbjct: 305 DVRRHIP 311
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 759 QKVTEVREDEARGSDDSEPGEEPASQEPREG 667
++V E E E SEPG+EP P EG
Sbjct: 1302 ERVKEYAETETEAEWKSEPGKEPPQNWPSEG 1332
>Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = -1
Query: 756 KVTEVREDEARGSDDSEPGEEPASQEP--REGLHNAGQERGQSIQK*S--SNDGDLSASS 589
KV V +D+ +D + E PA QEP ++ HN +E+ +K + DL
Sbjct: 201 KVEVVEDDDDDDDEDDDDVEAPAPQEPSRKQKAHNQREEKKDKNKKYQPVKEEPDLDDDD 260
Query: 588 VRQVTPEVRADAHSDERRGGEAA 520
+ + D DE+ G A
Sbjct: 261 DDEDDDDDDGDDDDDEKDDGNDA 283
>Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = -1
Query: 756 KVTEVREDEARGSDDSEPGEEPASQEP--REGLHNAGQERGQSIQK*S--SNDGDLSASS 589
KV V +D+ +D + E PA QEP ++ HN +E+ +K + DL
Sbjct: 201 KVEVVEDDDDDDDEDDDDVEAPAPQEPSRKQKAHNQREEKKDKNKKYQPVKEEPDLDDDD 260
Query: 588 VRQVTPEVRADAHSDERRGGEAA 520
+ + D DE+ G A
Sbjct: 261 DDEDDDDDDGDDDDDEKDDGNDA 283
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 759 QKVTEVREDEARGSDDSEPGEEPASQEPREG 667
++V E E E SEPG+EP P EG
Sbjct: 1302 ERVKEYAETETEAEWKSEPGKEPPQNWPSEG 1332
>AL034488-12|CAD31697.1| 450|Caenorhabditis elegans Hypothetical
protein Y54G11A.14 protein.
Length = 450
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = -1
Query: 738 EDEARGSDDSEPG---EEPASQEPREGLHNAGQERGQSIQK*SSNDGDLSASSVRQVTPE 568
EDE +DD E EE +E E A + K D ++ V+ P
Sbjct: 47 EDEDDDNDDDEDDDEEEEDEDEEEDEAEDEAEDDEENEEVKEEKEDEEVVEERVKVEEPR 106
Query: 567 VRADAHSDERRGGEAAL 517
RA A D+ G+A+L
Sbjct: 107 PRAVAERDDASEGDASL 123
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 737 KMRPVAPMIPNPEKNLQARNPEKD-CTTLDRNAARASKSRAPMMAIFRPRASA 582
+ RP P + P + L +R P C T R+AA A+++ P A P+A++
Sbjct: 333 RTRPAIPAVSAP-RALTSRAPTGPACPTTTRSAAPATRTAVPPRATAPPKAAS 384
>AF003138-5|AAL77178.1| 488|Caenorhabditis elegans Hypothetical
protein F12B6.2b protein.
Length = 488
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 688 CRFFSGFGIIGATGLIFPYFG 750
C F+S G++ TGLIF FG
Sbjct: 391 CAFYSLAGVLAVTGLIFQIFG 411
>AF003138-3|AAM15568.1| 504|Caenorhabditis elegans Hypothetical
protein F12B6.2c protein.
Length = 504
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 688 CRFFSGFGIIGATGLIFPYFG 750
C F+S G++ TGLIF FG
Sbjct: 391 CAFYSLAGVLAVTGLIFQIFG 411
>AF003138-2|AAM15567.1| 546|Caenorhabditis elegans Hypothetical
protein F12B6.2a protein.
Length = 546
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 688 CRFFSGFGIIGATGLIFPYFG 750
C F+S G++ TGLIF FG
Sbjct: 433 CAFYSLAGVLAVTGLIFQIFG 453
>Z81094-3|CAB03151.1| 477|Caenorhabditis elegans Hypothetical
protein F58G11.4 protein.
Length = 477
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 609 GDLSASSVRQVTPEVRADAHSDERRGGEAALVGGRQLEVILGGG 478
G L + + + A + SD+R + +GGR L +ILG G
Sbjct: 117 GGLGMGNTSTLRTTLTAHSMSDDRAKAMSVFIGGRALGLILGPG 160
>Z71265-1|CAA95832.1| 445|Caenorhabditis elegans Hypothetical
protein M05B5.1 protein.
Length = 445
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -1
Query: 741 REDEARGSDDSEPGEEPASQEPREGLHNAGQERGQSIQK*SSNDGDLSAS 592
R+D+ D+ EP ++P S+E + ++G+S +K ++ +SAS
Sbjct: 15 RQDDTIAEDEQEPTQQPTSKE----MSKEAMKKGKSKEKERASKDKMSAS 60
>U40802-6|AAV28320.1| 330|Caenorhabditis elegans Hypothetical
protein ZC477.3a protein.
Length = 330
Score = 28.3 bits (60), Expect = 7.5
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = -2
Query: 725 VAPMIPNPEKNLQ-ARNPEKDCTTLDRNAARASKSRAPMMAIFRPRASAKLPQKYEPTHI 549
V P PE +++ + +K TT+ AR SK + + + A+ +PT +
Sbjct: 224 VKPTDALPESDVKKVSDLDKLLTTIREENARLSKEMRELSRLAQLEAALDA----DPTSV 279
Query: 548 PMSGVAVRRPLSEDDSSKSFLVAGSTKLSVVVLSAQTAYTAP 423
G + R L + + + + T L+VVV+ A TAP
Sbjct: 280 VYVGSDMERLLEQTEKNIESKMKLRTLLTVVVIYTAVAVTAP 321
>Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical
protein F09A5.1 protein.
Length = 483
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 460 TLSFVLPATKNDFELSSSDKGRLTATPLIGMCVGSYFWGNLADARGRK 603
T++ VLP ++ + ++ S G + LI +GS G L D RK
Sbjct: 27 TIAGVLPDVQSYYNINDSMGGMIQTVFLISFMIGSPICGYLGDRFNRK 74
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 738 EDEARGSDDSE-PGEEPASQEPRE 670
EDE +DD E P +EPA EP++
Sbjct: 532 EDEPEDADDEEEPEDEPAEDEPKK 555
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,099,540
Number of Sequences: 27780
Number of extensions: 368523
Number of successful extensions: 1272
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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