Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N02
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.52 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   4.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 22/106 (20%), Positives = 43/106 (40%)
 Frame = -1

Query: 810 GPKHLEPAQHHVXVPQRQKVTEVREDEARGSDDSEPGEEPASQEPREGLHNAGQERGQSI 631
           G    +  Q H+   ++  + + ++     S  S+PG  P  Q+  +  H        S 
Sbjct: 184 GQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPRQQQQAQ-QHQGVVTSPLSQ 242

Query: 630 QK*SSNDGDLSASSVRQVTPEVRADAHSDERRGGEAALVGGRQLEV 493
           Q+ ++  G  SA+    + P +R+     ER+ G       + LE+
Sbjct: 243 QQQAAPQGAASANLPSPLYPWMRSQF---ERKRGRQTYTRYQTLEL 285


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 759 QKVTEVREDEAR-GSDDSEPGEEPASQEPREGL 664
           + V EV ED+   G DD +   E A+ +P EG+
Sbjct: 384 EAVGEVDEDDDDDGDDDDDDDVEAANGKPAEGM 416


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -2

Query: 617 PMMAIFRPRASAKLPQKYEPTHIPMSGVAVRRPL 516
           P  AI R  A    P  ++P       +A R P+
Sbjct: 399 PAFAIHRDSAIYPNPDSFDPERFDQDAMASRHPM 432


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -1

Query: 549 SDERRGG--EAALVGGRQLEVILGGGQHEAERGRAECADGVHGAAGQQQQPLEASVTGVM 376
           SD R  G  E+ ++ G   +++LGG     E+G A C   V+    Q+   LEA +  V 
Sbjct: 40  SDWRVAGRSESVVIPG---DIVLGGLFPVHEKGGASCGPNVYNRGVQR---LEAMLFAVD 93

Query: 375 QRGLEGRPLHSIFALSVLLHECDTD 301
           Q   +   L  I     +L  C  D
Sbjct: 94  QINRDEDILPGITIGVHILDTCGRD 118


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 438 GVHGAAGQQQQPLEASVTGVMQRGLEGRPLHSIFALSVLLHECDTD 301
           G H  AG QQ+P E  VT    +     P      L++L+  C+ D
Sbjct: 289 GYHAIAGGQQRPDENVVTDKKSKVNFALP-ELQHNLNILVDMCEQD 333


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 764 NDRKSPK*GKMRPVAPMIPNPEKNL 690
           ND +  +  K + + P +PN EK+L
Sbjct: 141 NDEEEAQKPKEQYIPPELPNDEKSL 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,267
Number of Sequences: 438
Number of extensions: 4137
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)