Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N01
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...    69   7e-13
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    31   0.28 
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    27   2.6  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 69.3 bits (162), Expect = 7e-13
 Identities = 27/74 (36%), Positives = 52/74 (70%)
 Frame = +1

Query: 43  LGRTKFLVPQELTMSQFLYIIRTKMKLRDSQALYLLVNDKVLASHSMTMAQAYQQFRSHD 222
           + + K+LVP +LT+ QF+Y+IR ++KL   +A+++ + D++L   +  M+  Y++ +S D
Sbjct: 44  IDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFI-DEILPPTAALMSTIYEEHKSED 102

Query: 223 GYLHITYAAQQVFG 264
           G+L+ITY+ +  FG
Sbjct: 103 GFLYITYSGENTFG 116


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +1

Query: 58  FLVPQELTMSQFLYIIRTKMKLRDSQALYLLVNDKVLASHSMTMAQAYQQFRSHDGYLHI 237
           +L  Q LT+SQ  Y +    +L  S+ +  L  D+V     +  +  +Q FR H GYL++
Sbjct: 21  YLETQRLTISQLDYSLSIPPQLLVSREISKL-EDEVC--EMLKESSLFQLFRKHKGYLNV 77

Query: 238 T 240
           T
Sbjct: 78  T 78


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 138 CL*IAEFHLCSYNVQKLRHCEFLW 67
           C+   EF  CSY +++L+ C+ +W
Sbjct: 145 CINEHEFSQCSYYLEQLKACQAMW 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,371
Number of Sequences: 5004
Number of extensions: 52052
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)