Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_N01
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   2.1  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   8.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   8.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 220 RESGTAGTPAPSSYCGSPKLCRSQASTMPVNRGV 119
           + + ++ + AP+S C SP+    +   MPV + V
Sbjct: 591 KPASSSASSAPTSVCSSPRSEDKEVEDMPVLKRV 624


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 193 APSSYCGSPKLCRSQASTMPVNRGVSSLF 107
           +PS    SP+   S AST P  R  SS++
Sbjct: 61  SPSPTGSSPQHSGSSASTSPAARTTSSMY 89


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 428 NSNYNRFKF*NEYVYLKLNYHK 363
           N+NY ++ + N+Y Y   NY+K
Sbjct: 93  NNNY-KYNYNNKYNYNNNNYNK 113


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 437 TKLNSNYNRFKF*NEYVYLKLNYHKYNQIL 348
           + L++NY    + N   Y   NY+ YN+ L
Sbjct: 316 SSLSNNYKYSNYNNYNNYNNNNYNNYNKKL 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,916
Number of Sequences: 438
Number of extensions: 4031
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)