Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_M24
(859 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O43809 Cluster: Cleavage and polyadenylation specificit... 321 2e-86
UniRef50_Q259F9 Cluster: H0124B04.17 protein; n=14; Eukaryota|Re... 205 1e-51
UniRef50_Q4WE76 Cluster: Cleavage and polyadenylation specific f... 191 2e-47
UniRef50_O65606 Cluster: Putative uncharacterized protein M7J2.8... 187 3e-46
UniRef50_Q6C1Q0 Cluster: Similar to wi|NCU09014.1 Neurospora cra... 167 2e-40
UniRef50_Q012R9 Cluster: MRNA cleavage factor I subunit; n=2; Os... 167 4e-40
UniRef50_A7PE32 Cluster: Chromosome chr11 scaffold_13, whole gen... 166 5e-40
UniRef50_Q94AF0 Cluster: AT4g29820/F27B13_60; n=3; Magnoliophyta... 159 6e-38
UniRef50_Q4PBX0 Cluster: Putative uncharacterized protein; n=2; ... 130 3e-29
UniRef50_Q5KEC3 Cluster: Putative uncharacterized protein; n=1; ... 115 2e-24
UniRef50_A2DA19 Cluster: Hydrolase, NUDIX family protein; n=1; T... 103 8e-21
UniRef50_Q9SZQ4 Cluster: MRNA cleavage factor subunit-like prote... 100 9e-20
UniRef50_A5K9S5 Cluster: mRNA cleavage factor-like protein, puta... 81 4e-14
UniRef50_Q7YZC1 Cluster: Pre-mRNA cleavage factor I 25 kDa subun... 80 6e-14
UniRef50_Q4N1V1 Cluster: MRNA cleavage factor protein, putative;... 68 4e-10
UniRef50_Q6BCA7 Cluster: Cleavage factor I 25 kDa; n=5; Trypanos... 60 7e-08
UniRef50_Q5CWT4 Cluster: NUDIX domain protein; mRNA cleavage fac... 60 9e-08
UniRef50_Q3LVX2 Cluster: Pre-mRNA cleavage factor I; n=1; Bigelo... 58 2e-07
UniRef50_A7ANZ8 Cluster: Putative uncharacterized protein; n=1; ... 56 1e-06
UniRef50_A4HEN7 Cluster: Putative uncharacterized protein; n=1; ... 50 6e-05
UniRef50_Q2V2W0 Cluster: Uncharacterized protein At5g63600.2; n=... 37 0.75
UniRef50_Q9FCX1 Cluster: YcfB protein; n=1; Erwinia amylovora|Re... 35 2.3
UniRef50_A6VQQ8 Cluster: TRAP transporter, 4TM/12TM fusion prote... 35 2.3
UniRef50_Q0E8B7 Cluster: CG41452-PA; n=2; Drosophila melanogaste... 34 5.3
UniRef50_Q9A8K7 Cluster: MutT/nudix family protein; n=2; Cauloba... 33 7.0
UniRef50_Q9A517 Cluster: MutT/nudix family protein; n=1; Cauloba... 33 7.0
UniRef50_A6V1V6 Cluster: Hydrolase, nudix family protein; n=7; P... 33 9.2
UniRef50_O18198 Cluster: Putative uncharacterized protein; n=2; ... 33 9.2
UniRef50_A0NFE5 Cluster: ENSANGP00000023517; n=1; Anopheles gamb... 33 9.2
UniRef50_A6S8V8 Cluster: Putative uncharacterized protein; n=2; ... 33 9.2
>UniRef50_O43809 Cluster: Cleavage and polyadenylation specificity
factor subunit 5; n=34; Bilateria|Rep: Cleavage and
polyadenylation specificity factor subunit 5 - Homo
sapiens (Human)
Length = 227
Score = 321 bits (788), Expect = 2e-86
Identities = 144/168 (85%), Positives = 158/168 (94%)
Frame = +2
Query: 248 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 427
LTL R+INLYPLTNYTFGTKEPL+EKD+SV ARFQRMREEF KIGMRR+VEGVL+VHEH
Sbjct: 31 LTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90
Query: 428 LPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLXRQDGVKQEWLIEDTIGNWWR 607
LPHVLLLQLGT FFKLPGGELNPGEDE++GLKRL+TE L RQDGV Q+W+I+D IGNWWR
Sbjct: 91 LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWR 150
Query: 608 PNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
PNFEPPQYPYIP HITKPKEHK+LFLVQLQ++ALFAVPKNYKLVAAPL
Sbjct: 151 PNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPL 198
Score = 34.3 bits (75), Expect = 4.0
Identities = 16/24 (66%), Positives = 16/24 (66%)
Frame = +1
Query: 763 DNAQGYGPIISSLSXSXCRXNXIY 834
DNA GYGPIISSL R N IY
Sbjct: 203 DNAPGYGPIISSLPQLLSRFNFIY 226
>UniRef50_Q259F9 Cluster: H0124B04.17 protein; n=14; Eukaryota|Rep:
H0124B04.17 protein - Oryza sativa (Rice)
Length = 2505
Score = 205 bits (501), Expect = 1e-51
Identities = 94/163 (57%), Positives = 111/163 (68%), Gaps = 1/163 (0%)
Frame = +2
Query: 266 INLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLL 445
+N+YPL NYTFGTKEP EKD SV R RM+ + K GMR SVE +LLV EH PH+LL
Sbjct: 9 VNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 68
Query: 446 LQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL-XRQDGVKQEWLIEDTIGNWWRPNFEP 622
LQ+G F KLPGG L PGE+EI+GLKR L L W + + + WWRPNFE
Sbjct: 69 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 128
Query: 623 PQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
YPY PPHITKPKE K+LF+V L +R FAVP+N KL+A PL
Sbjct: 129 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPRNLKLLAVPL 171
>UniRef50_Q4WE76 Cluster: Cleavage and polyadenylation specific
factor 5; n=19; Eukaryota|Rep: Cleavage and
polyadenylation specific factor 5 - Aspergillus
fumigatus (Sartorya fumigata)
Length = 334
Score = 191 bits (466), Expect = 2e-47
Identities = 88/170 (51%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Frame = +2
Query: 260 RSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHV 439
++I LYPL+NYTFGTKE E+D SV AR +R+ E + K GMRR+ EGVL+ HEH PHV
Sbjct: 83 KTIRLYPLSNYTFGTKETQPEEDPSVLARLKRLEEHYEKHGMRRTCEGVLVCHEHNHPHV 142
Query: 440 LLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL------XRQDGVKQEWLIEDTIGNW 601
L+LQ+ AFFKLPG L+ +DE++G K+ L E L +GV ++W I DT+ W
Sbjct: 143 LMLQIANAFFKLPGDYLHFDDDEVEGFKKRLNERLAPVGSQFSGEGVNEDWEIGDTLAQW 202
Query: 602 WRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
WRPNFE YP++P H+T+PKE K+L+ +QL + + +VPKN KL+A PL
Sbjct: 203 WRPNFETFMYPFLPGHVTRPKECKKLYFIQLPKKKVLSVPKNMKLLAVPL 252
>UniRef50_O65606 Cluster: Putative uncharacterized protein M7J2.80;
n=3; core eudicotyledons|Rep: Putative uncharacterized
protein M7J2.80 - Arabidopsis thaliana (Mouse-ear cress)
Length = 210
Score = 187 bits (456), Expect = 3e-46
Identities = 95/190 (50%), Positives = 118/190 (62%), Gaps = 22/190 (11%)
Frame = +2
Query: 248 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 427
+ +++ +N YPL+NY+FGTKEP EKD SV R RM+ + K GMR SVEG+LLV EH
Sbjct: 1 MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60
Query: 428 LPHVLLLQLGTAFFKLPGGELNPGED---------------EIDGLKRLLTETL-XRQDG 559
PH+LLLQ+G F KLPGG L PGE+ E DGLKR LT L
Sbjct: 61 HPHILLLQIGNTFCKLPGGRLKPGENGIQLPPFWVYYVVSAEADGLKRKLTSKLGGNSAA 120
Query: 560 VKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPK------EHKRLFLVQLQDRALFAVP 721
+ +W + + + WWRPNFE YPY PPHITKPK E KRL++V L ++ FAVP
Sbjct: 121 LVPDWTVGECVATWWRPNFETMMYPYCPPHITKPKVVKKHNECKRLYIVHLSEKEYFAVP 180
Query: 722 KNYKLVAAPL 751
KN KL+A PL
Sbjct: 181 KNLKLLAVPL 190
>UniRef50_Q6C1Q0 Cluster: Similar to wi|NCU09014.1 Neurospora crassa
NCU09014. 1 hypothetical protein; n=1; Yarrowia
lipolytica|Rep: Similar to wi|NCU09014.1 Neurospora
crassa NCU09014. 1 hypothetical protein - Yarrowia
lipolytica (Candida lipolytica)
Length = 262
Score = 167 bits (407), Expect = 2e-40
Identities = 82/169 (48%), Positives = 107/169 (63%), Gaps = 5/169 (2%)
Frame = +2
Query: 260 RSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHV 439
++I LYP +NY F TK+ E+D SV AR QR++ + + GM R VEGV L HE G P+V
Sbjct: 26 QTIRLYPSSNYVFATKDAQVERDVSVQARMQRLKSMYDESGMLRYVEGVFLCHEFGTPYV 85
Query: 440 LLLQLGTAFFKLPGGELNPG-EDEIDGLKRLLTETLXRQDGVKQE----WLIEDTIGNWW 604
LLQL FFKLPG L+P EDE GL R L + L ++G QE W + D + WW
Sbjct: 86 FLLQLPNNFFKLPGEYLDPDEEDEEGGLLRKLADRLSPENGEDQENSKSWKVLDCLAQWW 145
Query: 605 RPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
RPNFE YP++PPHI++PKE K+ FL+ L ++ F VP N +A PL
Sbjct: 146 RPNFEVFMYPFLPPHISRPKECKKTFLISLPEKIAFFVPSNMTFLAVPL 194
>UniRef50_Q012R9 Cluster: MRNA cleavage factor I subunit; n=2;
Ostreococcus|Rep: MRNA cleavage factor I subunit -
Ostreococcus tauri
Length = 279
Score = 167 bits (405), Expect = 4e-40
Identities = 80/167 (47%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
Frame = +2
Query: 260 RSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHV 439
R ++++ L NYTFGTK EKD+S AR RM+ ++ + G RRSV + +V +H PH+
Sbjct: 84 RVVDVHALGNYTFGTKRARGEKDSSAAARLLRMKTQYEREGKRRSVGAICMVSQHRTPHI 143
Query: 440 LLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL--XRQDGV-KQEWLIEDTIGNWWRP 610
LLLQ+ FKLPGG L GE E +GL R + L R+DG+ E+ + D + W+R
Sbjct: 144 LLLQITPTTFKLPGGRLRAGEGEREGLARKMQNKLQPEREDGLGAYEFDVGDQVATWYRT 203
Query: 611 NFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
+FEP YPY+P HITKPKE ++F+V L ++A FAVPKN KL+A PL
Sbjct: 204 SFEPQMYPYLPAHITKPKEEHKIFIVHLPEKAAFAVPKNLKLLAVPL 250
>UniRef50_A7PE32 Cluster: Chromosome chr11 scaffold_13, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr11 scaffold_13, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 291
Score = 166 bits (404), Expect = 5e-40
Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 257 NRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPH 436
N +++YPL+ Y FG+K+PL K+ ++ R RM+ + + G R V V+LV PH
Sbjct: 95 NHVLDIYPLSCYYFGSKDPLLLKEETLADRILRMKSNYSRYGSRTCVVAVILVELFKHPH 154
Query: 437 VLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL-XRQDGVKQEWLIEDTIGNWWRPN 613
+LLLQ+ +FFKLPGG L PGE EI+GLKR L+ L +DG +W + + +G WWRP+
Sbjct: 155 LLLLQVKNSFFKLPGGRLRPGESEINGLKRKLSRKLSVNEDGDGSDWEVGECLGMWWRPD 214
Query: 614 FEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
FE YPY+PP++ PKE +LFLV+L F VPKN KL+A PL
Sbjct: 215 FETLLYPYLPPNVKNPKECTKLFLVKLPPSRKFIVPKNLKLLAIPL 260
>UniRef50_Q94AF0 Cluster: AT4g29820/F27B13_60; n=3;
Magnoliophyta|Rep: AT4g29820/F27B13_60 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 222
Score = 159 bits (387), Expect = 6e-38
Identities = 79/163 (48%), Positives = 103/163 (63%), Gaps = 1/163 (0%)
Frame = +2
Query: 266 INLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLL 445
++LYPL++Y FG+KE L KD + R R++ + G+R VE VLLV PHVLL
Sbjct: 29 VDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVLL 88
Query: 446 LQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLXRQDGV-KQEWLIEDTIGNWWRPNFEP 622
LQ + FKLPGG L PGE +I+GLKR L L + V + + + IG WWRPNFE
Sbjct: 89 LQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFET 148
Query: 623 PQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
YP++PP+I PKE +LFLV+L F VPKN+KL+A PL
Sbjct: 149 LMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPL 191
>UniRef50_Q4PBX0 Cluster: Putative uncharacterized protein; n=2;
Ustilago|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 258
Score = 130 bits (315), Expect = 3e-29
Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 14/136 (10%)
Frame = +2
Query: 254 LNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLP 433
+++++ LYP+T +TF TK+ E+D SV AR QR++ + +GMRR+VE VL+VHEHG P
Sbjct: 1 MSQTLTLYPVTAFTFTTKDAQPEEDPSVAARLQRLQNNYEDLGMRRTVEAVLVVHEHGHP 60
Query: 434 HVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL-----------XRQDGVKQ---E 571
HVL+LQ+ AFFKLPG L PGEDE++G+K L E L +G + +
Sbjct: 61 HVLMLQIANAFFKLPGDYLKPGEDEVEGIKARLDERLGPVESDPNSFGPNGEGRNKDDGD 120
Query: 572 WLIEDTIGNWWRPNFE 619
W I+D + WWRPNFE
Sbjct: 121 WEIQDCLAQWWRPNFE 136
>UniRef50_Q5KEC3 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 229
Score = 115 bits (276), Expect = 2e-24
Identities = 72/199 (36%), Positives = 104/199 (52%), Gaps = 36/199 (18%)
Frame = +2
Query: 263 SINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLV--------- 415
+I +PL NY F +E E+D SV R +R+ +++ + G RRSVE +++V
Sbjct: 8 TIEAFPLRNYLFIEREGQPEEDNSVTNRLKRLEDQYKESGTRRSVEAIMVVTVGNSISPS 67
Query: 416 --------HEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTE-------TLXR 550
HG HVL+LQ+ AF+KLPGG L+P E + +GL L E TL
Sbjct: 68 RALLNLPVQVHGFAHVLVLQVANAFYKLPGGYLDPSESDAEGLITRLNEQLGVPVTTLKG 127
Query: 551 QDGVK------------QEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQL 694
+D ++W + D + W+RP+F+ YPY P H++ PKE K+L+LV L
Sbjct: 128 KDEDDLPRTVWLAPEGGRDWEVRDCLSVWYRPHFDTFLYPYAPAHVSYPKECKKLYLVNL 187
Query: 695 QDRALFAVPKNYKLVAAPL 751
FAVP N KL A P+
Sbjct: 188 PPNKTFAVPANMKLHAIPI 206
>UniRef50_A2DA19 Cluster: Hydrolase, NUDIX family protein; n=1;
Trichomonas vaginalis G3|Rep: Hydrolase, NUDIX family
protein - Trichomonas vaginalis G3
Length = 191
Score = 103 bits (246), Expect = 8e-21
Identities = 53/161 (32%), Positives = 92/161 (57%), Gaps = 1/161 (0%)
Frame = +2
Query: 263 SINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVL 442
S+ ++ L+NY FG E E++ + R ++++E F G +SV ++L HEH + +L
Sbjct: 2 SLRIHKLSNYRFGASEDEEEEEKAHTDRMEKIKEIFAVEGTVKSVRCIILAHEHNITTIL 61
Query: 443 LLQ-LGTAFFKLPGGELNPGEDEIDGLKRLLTETLXRQDGVKQEWLIEDTIGNWWRPNFE 619
LL+ ++PGG + GE++ +KR+LT+ +G E+ I D + W+RP F
Sbjct: 62 LLKNKNKKKLQMPGGIVRTGEEDEAAIKRILTKKFRIVEG---EFDIGDHVATWYRPQFS 118
Query: 620 PPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVA 742
YPY+P HIT+ KE ++ ++V L ++A F + +L A
Sbjct: 119 EYLYPYLPAHITQAKEIEKWYIVMLPEKAHFNIQSKNELSA 159
>UniRef50_Q9SZQ4 Cluster: MRNA cleavage factor subunit-like protein;
n=1; Arabidopsis thaliana|Rep: MRNA cleavage factor
subunit-like protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 185
Score = 99.5 bits (237), Expect = 9e-20
Identities = 66/162 (40%), Positives = 86/162 (53%)
Frame = +2
Query: 266 INLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLL 445
++LYPL++Y FG+KE L R+++E ++ H PHVLL
Sbjct: 29 VDLYPLSSYYFGSKEAL------------RVKDE-------------IISDRH--PHVLL 61
Query: 446 LQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLXRQDGVKQEWLIEDTIGNWWRPNFEPP 625
LQ + FKLPGG L PGE GL +L V + IG WWRPNFE
Sbjct: 62 LQYRNSIFKLPGGRLRPGES---GLVCCFLASLCINIAVGE------CIGMWWRPNFETL 112
Query: 626 QYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
YP++PP+I PKE +LFLV+L F VPKN+KL+A PL
Sbjct: 113 MYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPL 154
>UniRef50_A5K9S5 Cluster: mRNA cleavage factor-like protein,
putative; n=12; root|Rep: mRNA cleavage factor-like
protein, putative - Plasmodium vivax
Length = 267
Score = 81.0 bits (191), Expect = 4e-14
Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Frame = +2
Query: 272 LYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQ 451
+YP NY F E L K + ++ + + G+R S ++L H + PH+LLLQ
Sbjct: 59 VYPQANYEFNIDEKLKSKFVMDADKCKKRINTYNQNGIRSSALAIILCHRYEYPHLLLLQ 118
Query: 452 -LGTAFFKLPGGELNPGEDEIDGLKRLLTETLXR--------------QDGVKQEWLIED 586
+ + + L G+ E D LK+ L + + + Q + I +
Sbjct: 119 NVESQTYYLLSGKYRSWEKPRDVLKKKLQKYVNQIRDMHFATSHFNAEQKESEDPIEIGE 178
Query: 587 TIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
+G WW+ F PY+P HIT+PKE+ RL+ V L R +F +P + L A PL
Sbjct: 179 FLGEWWKTQFNSVYLPYLPAHITRPKEYIRLYQVTLTSRCIFHLPPGFTLKALPL 233
>UniRef50_Q7YZC1 Cluster: Pre-mRNA cleavage factor I 25 kDa subunit;
n=3; Entamoeba histolytica|Rep: Pre-mRNA cleavage factor
I 25 kDa subunit - Entamoeba histolytica
Length = 236
Score = 80.2 bits (189), Expect = 6e-14
Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
Frame = +2
Query: 266 INLYPLTNYTFGTKEPLFE-KDASVPARFQRMREEFCKIGM-RRSVEGVLLVHEHGLPHV 439
+ +YP+ NY KE L + K + + +++ K + R SV GV+LVH++ PH+
Sbjct: 40 LKIYPIENYQIDKKEKLDKLKHQTFGYQMDQLKISVEKNHVPRTSVYGVILVHKNNFPHL 99
Query: 440 LLLQLGTAF-----FKLPGGELNPGEDE-IDGLKRLLTETLXRQDGVKQEWLIEDTIGNW 601
L+LQ + L GG L GED+ ++GLKR L + + + E I + +G +
Sbjct: 100 LVLQSNLSMDLKDEIHLVGGRLKIGEDDPVEGLKRKLRKKMSMEYITHYE--IGELLGTF 157
Query: 602 WRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
+R ++ YPYIP H+++ KE ++++ L ++ F + KL + PL
Sbjct: 158 YRIEYDKNLYPYIPVHVSQVKEIINIYMIHLVEKCDFKIFDTDKLSSIPL 207
>UniRef50_Q4N1V1 Cluster: MRNA cleavage factor protein, putative;
n=2; Theileria|Rep: MRNA cleavage factor protein,
putative - Theileria parva
Length = 226
Score = 67.7 bits (158), Expect = 4e-10
Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Frame = +2
Query: 380 GMRRSVEGVLLVHEHGLPHVLLLQLGT-AFFKLPGGEL----NPGEDEIDGLKRLLTETL 544
GMR +V GV+L H G P VLLL+ L GG+ NP E L R +T T
Sbjct: 64 GMRITVCGVILSHRKGFPFVLLLKRDLDKSVGLLGGKCKSFENPKEVLSSKLARFITSTK 123
Query: 545 XR-QDGVKQ--EWL-IEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALF 712
+ Q +K+ E + + + + ++WR +F PY+P H +PKE L+ V LQ+
Sbjct: 124 HKHQLNIKETIETIQVGELLADFWRCDFNTEPLPYLPLHTNRPKEKISLYQVVLQESCKI 183
Query: 713 AVPKNYKLVAAPL 751
+VPK Y L PL
Sbjct: 184 SVPKGYSLKFVPL 196
>UniRef50_Q6BCA7 Cluster: Cleavage factor I 25 kDa; n=5;
Trypanosomatidae|Rep: Cleavage factor I 25 kDa -
Trypanosoma cruzi
Length = 292
Score = 60.1 bits (139), Expect = 7e-08
Identities = 68/199 (34%), Positives = 91/199 (45%), Gaps = 50/199 (25%)
Frame = +2
Query: 305 KEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHV-LLLQLGT------- 460
K PL EK S+ AR REE C SVEGVLLVH H PHV LL T
Sbjct: 72 KTPL-EKLMSLKAR---CREEQCV----HSVEGVLLVHVHDHPHVLLLRHANTKASAHSR 123
Query: 461 ----------AFFKLPGGELNPGE-DEIDGLKRLLTETLXRQDGV---------KQEWLI 580
A F LPGG GE +EI L++L + L + + E ++
Sbjct: 124 VLPATNTNNLAVFSLPGGRCRKGEPEEICLLRKLGRDLLNEKKSLMASRTAESESSEMVV 183
Query: 581 E-------------------DTIGNWWRPNFEPPQYPYIPPHITKP--KEHKRLFLVQLQ 697
E + +G W+RP+F+P YPY+P H+ + KE + +FLV L
Sbjct: 184 EVGASHSLAVAPSSSSFRVGEALGRWYRPHFDPFMYPYVPAHVAESDVKEVRTVFLVHLP 243
Query: 698 DRALFAV-PKNYKLVAAPL 751
+ L V ++ +LVAAPL
Sbjct: 244 PQMLLTVAQRDVELVAAPL 262
>UniRef50_Q5CWT4 Cluster: NUDIX domain protein; mRNA cleavage
factor-like protein Im like, plant+animal group; n=3;
Cryptosporidium|Rep: NUDIX domain protein; mRNA cleavage
factor-like protein Im like, plant+animal group -
Cryptosporidium parvum Iowa II
Length = 277
Score = 59.7 bits (138), Expect = 9e-08
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +2
Query: 578 IEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
+ + +G WWR F PY+PPH T+PKE R++ V L + LF +PK++ L + PL
Sbjct: 188 VGEYLGTWWRTEFNYSPLPYLPPHSTRPKETIRIYQVILPPKLLFKLPKHHVLKSLPL 245
Score = 42.7 bits (96), Expect = 0.011
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +2
Query: 230 QNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPAR----FQRMREEFCKIGMRRSV 397
Q+ + N+ S +YPL NY ++ E +S+P F + F K G+ RSV
Sbjct: 39 QSMATNVDHEPSWLIYPLKNYGIRVQDNSDEIQSSIPINEMNGFNVKVDNFLKDGIGRSV 98
Query: 398 EGVLLVHEHGLPHVLLLQ 451
++L H + PHV+LLQ
Sbjct: 99 AALMLTHRYLCPHVVLLQ 116
>UniRef50_Q3LVX2 Cluster: Pre-mRNA cleavage factor I; n=1;
Bigelowiella natans|Rep: Pre-mRNA cleavage factor I -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 202
Score = 58.4 bits (135), Expect = 2e-07
Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Frame = +2
Query: 275 YPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQL 454
YP+ NY F T + + KD + + QR++ +F K G S + +++V +H P+VLL +
Sbjct: 5 YPIENYKFYTSKAVKRKDRKMRHKLQRLKYKFLKFGSFASRKSIVIVTKHKHPYVLLFRS 64
Query: 455 GTAFFKLPGGELNPGEDEIDGLKRLLTETLXR-QDGVKQEWLIEDTIGNWWRPNFEPPQY 631
F + + + + D LK++ E + + + + + + R FE Y
Sbjct: 65 FNDKFDIIDID-KLLKFKSDHLKKVNLENVNNVSKNLFTKSMNSRLVSIFLRQGFESKLY 123
Query: 632 PYIPPHITKPKEHKRLFLVQLQDRALFAV------PKNYKLVAAP 748
PY PHI K+ ++L L+ LF V PKN+++ A P
Sbjct: 124 PYCLPHIKYTKQIFFVYLNFLKKNELFQVLLSSKIPKNFEVKAFP 168
>UniRef50_A7ANZ8 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 357
Score = 56.0 bits (129), Expect = 1e-06
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Frame = +2
Query: 380 GMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLXR-QD 556
G+R +V G++L H +G P +L+L+ + L GG+ E+ + LK L + +
Sbjct: 59 GLRITVYGLILCHRNGFPCILVLRDTSGNIGLLGGKCKSFENPREVLKLKLARFVSTSRK 118
Query: 557 GVKQ--------EWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALF 712
GV Q ++ + +G +WR ++ PY+P HI +P+E ++ V L+++ F
Sbjct: 119 GVHQLNVRANVDTIIVGEFMGEFWRAEYDSDVLPYLPLHINRPREKILIYQVTLREQCSF 178
Query: 713 AVP 721
P
Sbjct: 179 IAP 181
>UniRef50_A4HEN7 Cluster: Putative uncharacterized protein; n=1;
Leishmania braziliensis|Rep: Putative uncharacterized
protein - Leishmania braziliensis
Length = 271
Score = 50.4 bits (115), Expect = 6e-05
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +2
Query: 578 IEDTIGNWWRPNFEPPQYPYIPPHI--TKPKEHKRLFLVQLQDRALF-AVPKNYKLVAAP 748
I + + W+RP+F P YPY+P HI + +E + ++LV L+ F V + +LVAAP
Sbjct: 178 IGEVLSTWYRPHFTPHMYPYVPAHIAASSVREVRTVYLVHLEPTVYFNLVQEGVELVAAP 237
Query: 749 L 751
L
Sbjct: 238 L 238
Score = 35.5 bits (78), Expect = 1.7
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +2
Query: 350 QRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQ 451
+R EE C SVEGVLLVH H PHVLL++
Sbjct: 58 KRCEEELCV----HSVEGVLLVHLHRHPHVLLMK 87
>UniRef50_Q2V2W0 Cluster: Uncharacterized protein At5g63600.2; n=5;
Arabidopsis thaliana|Rep: Uncharacterized protein
At5g63600.2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 326
Score = 36.7 bits (81), Expect = 0.75
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +2
Query: 401 GVLLVHEHGLPHVLLLQL---GTAFFKLPGGELN--PGEDEIDGLKRLLTETLXRQDGVK 565
GV V HG+P L+ QL GT FF+LP E E++ +G K+ + D
Sbjct: 58 GVFQVVNHGIPTELMRQLQMVGTQFFELPDAEKETVAKEEDFEGYKKNYLGGINNWDEHL 117
Query: 566 QEWLIEDTIGN--WWRPNFEPPQYPYIPPHITK 658
L +I N +W N PPQY + TK
Sbjct: 118 FHRLSPPSIINYKYWPKN--PPQYREVTEEYTK 148
>UniRef50_Q9FCX1 Cluster: YcfB protein; n=1; Erwinia amylovora|Rep:
YcfB protein - Erwinia amylovora (Fire blight bacteria)
Length = 132
Score = 35.1 bits (77), Expect = 2.3
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +2
Query: 407 LLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLXRQ 553
+++H+ L +L + GTA F PGG+ GED + LKR L E L Q
Sbjct: 10 IIIHQRSL--LLTRKRGTAIFISPGGKPLAGEDHLSCLKRELDEELGVQ 56
>UniRef50_A6VQQ8 Cluster: TRAP transporter, 4TM/12TM fusion protein
precursor; n=1; Actinobacillus succinogenes 130Z|Rep:
TRAP transporter, 4TM/12TM fusion protein precursor -
Actinobacillus succinogenes 130Z
Length = 628
Score = 35.1 bits (77), Expect = 2.3
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -2
Query: 420 SCTNNTPSTDLL-IPILQNSSRILWNLAGTDASFSNSGSLVPNV*FVSGYKLIDLLRVKF 244
S NT ST +L IPI++ S A T+A S G L+P + ++ + + D+L V +
Sbjct: 231 SAVANTTSTGVLTIPIMKRSGYTTEQAAATEAIASTGGQLMPPIMGIAAFVMADMLGVPY 290
>UniRef50_Q0E8B7 Cluster: CG41452-PA; n=2; Drosophila
melanogaster|Rep: CG41452-PA - Drosophila melanogaster
(Fruit fly)
Length = 399
Score = 33.9 bits (74), Expect = 5.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 176 PPGNKQWPARPGLQHQISQNPSMNLTLNR 262
P +WP RPG+ +S N NLT+NR
Sbjct: 38 PKSPPRWPIRPGVMLHVSSNTKENLTVNR 66
>UniRef50_Q9A8K7 Cluster: MutT/nudix family protein; n=2;
Caulobacter|Rep: MutT/nudix family protein - Caulobacter
crescentus (Caulobacter vibrioides)
Length = 131
Score = 33.5 bits (73), Expect = 7.0
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 437 VLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL 544
+L+ + GTA F PGG+ + GED++ L R L E L
Sbjct: 20 LLVRKRGTAIFMKPGGKRDAGEDDLTTLARELREEL 55
>UniRef50_Q9A517 Cluster: MutT/nudix family protein; n=1;
Caulobacter vibrioides|Rep: MutT/nudix family protein -
Caulobacter crescentus (Caulobacter vibrioides)
Length = 238
Score = 33.5 bits (73), Expect = 7.0
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 374 KIGMRRSVEGVLLVHEHGLPHVL---LLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL 544
K+G + G++ +H+ G ++ L ++LP G GED +DG KR L E +
Sbjct: 84 KVGFKNQAIGIVPLHDDGTVTLVGQNRFSLANYSWELPEGGAPHGEDPLDGAKRELAEEV 143
Query: 545 XRQ 553
Q
Sbjct: 144 GLQ 146
>UniRef50_A6V1V6 Cluster: Hydrolase, nudix family protein; n=7;
Pseudomonas|Rep: Hydrolase, nudix family protein -
Pseudomonas aeruginosa PA7
Length = 152
Score = 33.1 bits (72), Expect = 9.2
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 437 VLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL 544
+L+ + GT F LPGG+ PGE + L+R L E L
Sbjct: 21 LLVRKRGTQAFMLPGGKREPGETPLAALQRELLEEL 56
>UniRef50_O18198 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 611
Score = 33.1 bits (72), Expect = 9.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +2
Query: 539 TLXRQDGVKQEWLIEDTIGNWWRPNFEPPQ----YPYIPPHITKPKEHKRL 679
T R DG K W+ + + N+WR P Q P IPP + P + RL
Sbjct: 38 TTPRPDG-KTRWIPQYNLQNFWRRKIPPLQCGLIEPLIPPRLRSPDDFSRL 87
>UniRef50_A0NFE5 Cluster: ENSANGP00000023517; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000023517 - Anopheles gambiae
str. PEST
Length = 430
Score = 33.1 bits (72), Expect = 9.2
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 164 AVQGPPGNKQWPARPGLQH----QISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDA 331
AV+G G ++ PARP L+H Q+S ++R+++ P T T P +
Sbjct: 5 AVRGRTGRRELPARPQLRHPVHAQLSAGVLPAAAVHRAVSAAPHTERTARASSPCTTIRS 64
Query: 332 SVPAR 346
++PAR
Sbjct: 65 ALPAR 69
>UniRef50_A6S8V8 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 956
Score = 33.1 bits (72), Expect = 9.2
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +2
Query: 467 FKLPGGELNPGEDEIDGLKRLLTETLXRQDGVKQEWLIEDTIGNWWRPNF-EPPQYPYIP 643
F + GG+ N GE E+D + L + R +G+ N + P EPP+Y +
Sbjct: 153 FNILGGKKN-GEPEVDDDESELGDQ--RTEGMNAHVFSSSIGANGYIPRHKEPPRYIKVR 209
Query: 644 PHITKPKEHKRLFLVQ 691
H K E R+FL Q
Sbjct: 210 AHHKKTTEFNRMFLAQ 225
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,165,363
Number of Sequences: 1657284
Number of extensions: 16671959
Number of successful extensions: 47574
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47544
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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