Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M24
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    32   0.091
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    28   2.0  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   2.6  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    26   6.0  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   7.9  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 32.3 bits (70), Expect = 0.091
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 373 TKLLSHPLEPRRDRCVLLEQRLLSSERVIRKWIQ 272
           +KL+S P  P R RC LLE     +E     W+Q
Sbjct: 494 SKLVSEPEPPIRSRCALLENMFNPAEETSPNWVQ 527


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 542 LXRQDGVKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQ 691
           L R+  +  + +   T  + WR N EP     +  HI+  K++ ++FL++
Sbjct: 206 LAREAEIAYQMVCMATDYDCWRMNEEPVTVETVMEHISNNKDNAKIFLLE 255


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +2

Query: 140  NKIKYKMAAVQGPPGNKQWPARPGLQHQISQNPSMNLTLNRSI-NLYPLTNYTFGTKEPL 316
            +KI+ ++  +     +K  P    + H++S    + L++  SI N+ P     F  KEP 
Sbjct: 919  DKIRVRVLGIHDSRNHKFLP----ISHRVSPKQFLELSVRPSILNMEP-----FSMKEPQ 969

Query: 317  FEKDASVPARFQRMREEFCKIGMRRSVEG 403
            F+K   V      + +E   + +  SV G
Sbjct: 970  FKKGDEVTGFVNNVSKECVWVSLTPSVNG 998


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 518 LKRLLTETLXRQDGVKQEWLIEDTIGNWWRPNFEPPQY 631
           ++RL  ET   ++  K   L+ + +     PNF+PP+Y
Sbjct: 221 IRRLNAETTVEKELPKPIDLVSEKLATSNIPNFQPPKY 258


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 206 PGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFEKDASVPARF-QRMREEFCKIG 382
           P L+ +    P+  +  NRS+  +  ++YT  +   ++E +   PAR    + +EF ++ 
Sbjct: 77  PMLRGENRACPNAYMKYNRSLIYHGYSSYTASSCTAIYECEGDYPARTGNEIIDEFDQLN 136

Query: 383 MRRSVEG 403
           ++ S  G
Sbjct: 137 LQCSACG 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,423
Number of Sequences: 5004
Number of extensions: 69685
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)