Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M24
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-4|CAB02106.1|  227|Caenorhabditis elegans Hypothetical pr...   264   6e-71
Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protei...    32   0.60 
Z81057-4|CAB02918.1|  559|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>Z79755-4|CAB02106.1|  227|Caenorhabditis elegans Hypothetical
           protein F43G9.5 protein.
          Length = 227

 Score =  264 bits (647), Expect = 6e-71
 Identities = 116/165 (70%), Positives = 136/165 (82%)
 Frame = +2

Query: 257 NRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPH 436
           NR+IN+YPLTNYTFGTK+   EKD SVP RF+RM++E+  +GMRRSVE VL+VHEH LPH
Sbjct: 31  NRTINVYPLTNYTFGTKDAQAEKDKSVPERFKRMKDEYEVMGMRRSVEAVLIVHEHSLPH 90

Query: 437 VLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLXRQDGVKQEWLIEDTIGNWWRPNF 616
           +LLLQ+GT F+KLPGGEL  GEDEI G+ RLL ETL R DG   EW IED IGNWWRPNF
Sbjct: 91  ILLLQIGTTFYKLPGGELELGEDEISGVTRLLNETLGRTDGETNEWTIEDEIGNWWRPNF 150

Query: 617 EPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPL 751
           +PP+YPYIP H+TKPKEH +L LVQL  ++ F VPKN+KLVAAPL
Sbjct: 151 DPPRYPYIPAHVTKPKEHTKLLLVQLPSKSTFCVPKNFKLVAAPL 195



 Score = 33.1 bits (72), Expect = 0.26
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 700 QSSICCTEELQAGRGTIVGXXDNAQGYGPIISSLSXSXCRXNXIY 834
           +S+ C  +  +     +    DNA  YGP+ISSL  +  R N I+
Sbjct: 179 KSTFCVPKNFKLVAAPLFELYDNAAAYGPLISSLPTTLSRFNFIF 223


>Z93393-5|CAB07690.1|  611|Caenorhabditis elegans Hypothetical
           protein Y48E1B.4 protein.
          Length = 611

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 539 TLXRQDGVKQEWLIEDTIGNWWRPNFEPPQ----YPYIPPHITKPKEHKRL 679
           T  R DG K  W+ +  + N+WR    P Q     P IPP +  P +  RL
Sbjct: 38  TTPRPDG-KTRWIPQYNLQNFWRRKIPPLQCGLIEPLIPPRLRSPDDFSRL 87


>U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protein
           75 protein.
          Length = 285

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 98  IFSCDHLCIRGFVKNKIKYKMAAVQGPPGNKQWPARPGLQHQISQNPSMNL 250
           +F C  +C  G  K K  YK   + GPPG   WP  PG++    +  S  L
Sbjct: 124 VFGC-RICPYG-PKGKSGYK--GIDGPPGIPGWPGEPGVRGMNGERGSTGL 170


>Z81057-4|CAB02918.1|  559|Caenorhabditis elegans Hypothetical
           protein F10D11.5 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 212 LQHQISQNP--SMNLTLNRSINLYPLTN 289
           L+H+I   P  S+NLT+NR  N+  LTN
Sbjct: 165 LEHEIQSKPARSVNLTVNRVWNIKCLTN 192


>Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical
           protein E03G2.4 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 155 KMAAVQGPPGNKQWPARPGLQ 217
           ++A ++GPPG    P  PGLQ
Sbjct: 253 EVAGLEGPPGQSGLPGMPGLQ 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,692,419
Number of Sequences: 27780
Number of extensions: 404864
Number of successful extensions: 1270
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)