Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M23
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   3.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 559 PPPXGXGGXFXXPPPPPP 612
           PPP G  G    PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 559 PPPXGXGGXFXXPPPPPP 612
           PPP   G     PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 559 PPPXGXGGXFXXPPPPPPXKKPXXRXXG 642
           PPP    G     PPPPP   P     G
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 25/103 (24%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
 Frame = +1

Query: 595 PPPPPPXKKPXXRXXGGGG--GXXXPPRGGIXFSXNXGXTPXKNFXKXXPKXXAPXXKXX 768
           PPPPPP ++   +   G G      PP      S   G  P     +  P    P     
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371

Query: 769 XXGGX*KRXPPPPXKNXKKXSSPXXXGGPPPRXX*KKXQXXPP 897
                     PPP  + +  S+P     PPP    +     PP
Sbjct: 372 TG------RQPPPLSSSRAVSNPP---APPPAIPGRSAPALPP 405



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +1

Query: 562 PPXGXGGXFXXPPPPPPXKKPXXRXXGGGGGXXXPPRG 675
           PP G G      PPPPP  +         G    PP+G
Sbjct: 325 PPIGNGSSNSSLPPPPPPPR-----SNAAGSIPLPPQG 357


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 559 PPPXGXGGXFXXPPPPPP 612
           PPP G       PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.6 bits (46), Expect(2) = 3.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 586 FXXPPPPPP 612
           F  PPPPPP
Sbjct: 944 FPPPPPPPP 952



 Score = 22.6 bits (46), Expect(2) = 3.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 598 PPPPPXKKPXXRXXGG 645
           PPPPP   P     GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,699,593
Number of Sequences: 5004
Number of extensions: 19556
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)