Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M22
         (848 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    33   0.004
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   4.0  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.3  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    21   9.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 424 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
           FE   L+  LL  + + G+ KP+ IQ+ +IP+ LSG
Sbjct: 160 FETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSG 195


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 364 IPPKDRRIKTSDVTDTRGNEFEEFCLKR 447
           I  K  R ++    D+ GN  EEF L R
Sbjct: 185 ISDKAARPRSLQFVDSEGNILEEFVLSR 212


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 219 LKLETYNHTNYYLSK 175
           L+LE   HTN+YL++
Sbjct: 236 LELEKEFHTNHYLTR 250


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 219 LKLETYNHTNYYLSK 175
           L+LE   HTN+YL++
Sbjct: 18  LELEKEFHTNHYLTR 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,169
Number of Sequences: 336
Number of extensions: 1909
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)