Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_M22
(848 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 109 2e-24
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 39 0.004
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 37 0.016
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 37 0.021
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 37 0.021
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 35 0.064
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 35 0.064
U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical p... 33 0.19
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 33 0.19
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 33 0.19
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 29 5.5
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 29 5.5
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 29 5.5
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 28 7.3
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 28 7.3
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 28 7.3
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 28 7.3
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 28 9.6
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 109 bits (262), Expect = 2e-24
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +1
Query: 337 DVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIP 516
D WK+ L +P KDRR KT+DVTDT+G EFE+FCL R+LLMGIFEKGWEKPSPIQEASI
Sbjct: 16 DENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIG 75
Query: 517 IALSG 531
+AL+G
Sbjct: 76 VALTG 80
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 537 VLARAKNGTGKXGAYCXP 590
+LARAKNGTGK GAYC P
Sbjct: 83 ILARAKNGTGKTGAYCIP 100
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 406 DTRGN-EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
DT N FE+ L R++L G+ P+PIQ+A IP+AL+G
Sbjct: 143 DTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTG 185
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 37.1 bits (82), Expect = 0.016
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 424 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAL 525
F++ L+ +LL GI+ G+EKPS IQ+ +IP L
Sbjct: 28 FDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAIL 61
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 385 IKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
I+ D D + F E + + L GW KPS IQ+A++P AL G
Sbjct: 33 IEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQG 81
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +1
Query: 424 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAL 525
F++ L+ +LL GI+ G+EKPS IQ+ ++P L
Sbjct: 28 FDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAIL 61
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 35.1 bits (77), Expect = 0.064
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 424 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
F++ LK ELL GI+ G+EKPS IQ+ +I +G
Sbjct: 31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTG 66
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 35.1 bits (77), Expect = 0.064
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 424 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
F++ LK ELL GI+ G+EKPS IQ+ +I +G
Sbjct: 31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTG 66
>U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical
protein F57B9.3 protein.
Length = 363
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 439 LKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
LK ELL GI+ G+EKPS IQ++++ +G
Sbjct: 3 LKEELLRGIYGFGFEKPSAIQKSAVAPCTTG 33
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 418 NEFEEFCLKRELLMGIFEK-GWEKPSPIQEASIPIALSG 531
N FE+ +MG K G+EKPSPIQ P+ LSG
Sbjct: 83 NSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSG 121
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 424 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAL 525
F +F L +L I E GWEK + +QE+ I +AL
Sbjct: 91 FADFGLDERILKSIGELGWEKANQVQESVISLAL 124
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 424 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
F F + L+ I + +E+P+PIQ +IP ALSG
Sbjct: 267 FAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSG 302
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +1
Query: 268 ISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGN---EFEEFC 438
++S V +S ++ EV++++ DV + + + R + D N F +
Sbjct: 73 LASRKRVHDSDGDSENEVEETVGDVEKRMQKLLDDIRRTNRIFTWGDHLPNIILRFSDSS 132
Query: 439 LKRELLMGIFEKGWEKPSPIQEASIP 516
+ LL + E +PSPIQ SIP
Sbjct: 133 MSPSLLNRLSENSIRQPSPIQMQSIP 158
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 406 DTRGN-EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
D + N FE + ++ L + +++PSP+Q +IP+ L G
Sbjct: 17 DVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLG 59
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 406 DTRGN-EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
D + N FE + ++ L + +++PSP+Q +IP+ L G
Sbjct: 17 DVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLG 59
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 28.3 bits (60), Expect = 7.3
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Frame = +1
Query: 232 RDKFGKMMTENRIS---SSNHVGNSISQTKGEVDKSIDDVGWKSK--LKIPPKDRRIKTS 396
++ F + M ENR + + + K E + DD W+ K ++ +D RI
Sbjct: 226 KNSFYQEMMENRRTVDEKEQEMHRLEKELKKEKKVAHDDRHWRMKELSEMSDRDWRIFRE 285
Query: 397 DVT-DTRGNE-------FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAL 525
D +G +EE E+ + E G+ +P+PIQ +IPI L
Sbjct: 286 DFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGL 336
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 424 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
+++ L + I +KG+ +P+PIQ +IP + G
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDG 61
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 424 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
+++ L + I +KG+ +P+PIQ +IP + G
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDG 61
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 424 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
FEEF + EL + W P+ +Q +IP L G
Sbjct: 4 FEEFGIIPELSDALSSLNWTLPTAVQSEAIPAILGG 39
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 424 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 531
FE+F L L G+ + + KP+ IQ +I +L+G
Sbjct: 78 FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTG 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,057,974
Number of Sequences: 27780
Number of extensions: 184609
Number of successful extensions: 471
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -