Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M21
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protei...    32   0.68 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    32   0.68 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    32   0.68 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    32   0.68 
AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen prot...    29   6.3  

>U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protein
           139 protein.
          Length = 310

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = -1

Query: 842 PAGXP-----PXXVGKPXLPPXXGGGXXPLXPXPEG-PGAXGXXG 726
           PAG P     P   GKP  P   GG   P  P P+G PG  G  G
Sbjct: 162 PAGEPGHDGAPGAPGKPGAPGVGGGSGAPGAPGPKGAPGGPGQPG 206


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 842 PAGXPPXXVGKPXLPPXXGGGXXPLXPXPEG 750
           P G PP   G P  PP  GG   P  P P G
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 842 PAGXPPXXVGKPXLPPXXGGGXXPLXPXPEG 750
           P G PP   G P  PP  GG   P  P P G
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 842 PAGXPPXXVGKPXLPPXXGGGXXPLXPXPEG 750
           P G PP   G P  PP  GG   P  P P G
Sbjct: 331 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361


>AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen protein
           108 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 842 PAGXPPXXVGKPXLPPXXGGGXXPLXPXPEGP-GAXGXXG 726
           PAG PP   G P  P   G    P  P P+GP G  G  G
Sbjct: 225 PAG-PPGPQGPPGAPGQPGHDGQPGTPGPKGPNGNPGAPG 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,597,674
Number of Sequences: 27780
Number of extensions: 136596
Number of successful extensions: 495
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)