Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M19
         (949 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       32   0.77 
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           31   1.8  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    30   3.1  
05_05_0173 + 22956927-22958615                                         29   7.1  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   9.4  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 25/92 (27%), Positives = 29/92 (31%), Gaps = 2/92 (2%)
 Frame = +3

Query: 654 LPVXPXPXTPXXPGSFGXGGXRXPXPPXGGXXGFSPXXXGXXPXXKXFXPXRAPXKG--P 827
           LP+ P   +P  P S        P PP       +       P  K   P   P KG  P
Sbjct: 288 LPLPPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKA-APPPPPPKGPPP 346

Query: 828 XXXXKGPXXXGXFXXXAPAPPGXXXXKXXAPP 923
               KGP         +P PP     K   PP
Sbjct: 347 PPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378



 Score = 29.5 bits (63), Expect = 4.1
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 648 PXXXKPXSPPXGXPXSXXARKXPPXPSPXDP 556
           P    P  PP G P    A+  PP P P  P
Sbjct: 332 PKAAPPPPPPKGPPPPPPAKGPPPPPPPKGP 362



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 651 PLPVXPXPXTPXXPGSFGXGGXRXPXPPXGG 743
           P P  P P  P  PG  G  G   P PP GG
Sbjct: 357 PPPKGPSPPPPPPPG--GKKGGPPPPPPKGG 385


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +3

Query: 651 PLPVXPXPXTPXXPGSFGXGGXRXPXPPXGGXXGFSPXXXGXXPXXK 791
           P P  P P  P  PG+ G GG   P P   G     P   G  P  K
Sbjct: 361 PRPPGPGPGPPPPPGAAGRGGGGPPPPALPG----GPRARGPPPFKK 403


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 30/123 (24%), Positives = 31/123 (25%)
 Frame = -2

Query: 939  PPPXXXGAXXFXXXPXXGGRGPXGXKXPXXXAPFXGXXXPXXGPFXVKXXFXXGXPPXXX 760
            PPP   G       P  GG G  G + P    P          P  V        PP   
Sbjct: 1111 PPPPPGGITGVPPPPPIGGLG--GHQAPPAP-PLPEGIGGVPPPPPVGGLGGPPAPPPPA 1167

Query: 759  GKTRIXPPXGXXEXXXPXXRXXRGPXXXXXXGKXEGGPXXXKPXSPPXGXPXSXXARKXP 580
            G     PP        P     RG           G P    P   P G P     R  P
Sbjct: 1168 GFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLP 1227

Query: 579  PXP 571
              P
Sbjct: 1228 APP 1230



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 24/86 (27%), Positives = 25/86 (29%)
 Frame = +3

Query: 690  PGSFGXGGXRXPXPPXGGXXGFSPXXXGXXPXXKXFXPXRAPXKGPXXXXKGPXXXGXFX 869
            P S G G    P PP GG  G  P             P     +G       P   G   
Sbjct: 1101 PPSIGAGAP-PPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGG 1159

Query: 870  XXAPAPPGXXXXKXXAPPXXXGGXNP 947
              AP PP         PP   GG  P
Sbjct: 1160 PPAPPPPAGFRG-GTPPPNAHGGVAP 1184


>05_05_0173 + 22956927-22958615
          Length = 562

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -2

Query: 648 PXXXKPXSPPXGXPXSXXARKXPPXPSPXDP 556
           P   +P  PP   P +   R   P P P DP
Sbjct: 58  PLETEPLHPPYSPPPAELVRPPTPLPEPYDP 88


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = -2

Query: 687 PXXXXXXGKXEGGPXXXKPXSPPXGXPXSXXARKXPPXPSPXDP 556
           P       K    P    P  PP   P S  A   PP P P  P
Sbjct: 550 PPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPP 593


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,693,076
Number of Sequences: 37544
Number of extensions: 300759
Number of successful extensions: 672
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)