Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_M19
(949 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 32 0.25
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.6
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 4.9
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 8.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 8.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 8.5
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.9 bits (69), Expect = 0.69
Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Frame = +3
Query: 666 PXPXTPXXPGSFGXGGXRXPXPPXGGXXGFSPXXXG----XXPXXKXFXPXRAPXKG 824
P P P PGS+G PP GG GF P G P F P AP G
Sbjct: 412 PPPGGPGAPGSYG--------PPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPG 460
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/81 (29%), Positives = 25/81 (30%)
Frame = +1
Query: 646 GXPFXFXPXXXXXWXPXXSXXGXXGFXXPXXGGNXGFPPXXXGXXPGKXXFXPKGPXXRX 825
G P F P P G G+ P GG G P G F P P
Sbjct: 385 GPPGAFAPPPSAFGAPQ-GPGGPGGYGPPPPGG-PGAPGSYGPPQGGPGGFGPPPPGG-- 440
Query: 826 XXPXKRGXXXXXFXPXGPPPP 888
P G F P G PPP
Sbjct: 441 --PGAYGPPPTGFPPVGAPPP 459
Score = 29.1 bits (62), Expect(2) = 0.25
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -1
Query: 742 PPXGGXGXRXPPXPXXPGXXGVXGXGXTGRGXXXXXTXLSPXG 614
PP GG G PP P PG G G G +P G
Sbjct: 425 PPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGG 467
Score = 23.0 bits (47), Expect(2) = 0.25
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = -1
Query: 934 PXXXGGAXXXXXXXPGGAGAXXXKXPXXXGP 842
P GG PGG GA P GP
Sbjct: 400 PQGPGGPGGYGPPPPGGPGAPGSYGPPQGGP 430
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = -3
Query: 896 PPXGGGGPXGKXXXXXXPLXXGXXXLXXGPXGXKXFXPGXXPXXXGGKPXXPPXXGXXXP 717
PP GG P P+ G P G P P G P PP G P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Query: 716 XXP 708
P
Sbjct: 796 MAP 798
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/69 (28%), Positives = 21/69 (30%)
Frame = -3
Query: 896 PPXGGGGPXGKXXXXXXPLXXGXXXLXXGPXGXKXFXPGXXPXXXGGKPXXPPXXGXXXP 717
PP G P P G + GP PG P GG P PP G P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP--PGGLPPISGGPPPPPPPPGGCPP 770
Query: 716 XXPXXEXXG 690
P G
Sbjct: 771 PPPPPPPGG 779
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = -3
Query: 896 PPXGGGGPXGKXXXXXXPLXXGXXXLXXGPXGXKXFXPGXXPXXXGGKPXXPPXXGXXXP 717
PP GG P P+ G P G P P G P PP G P
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Query: 716 XXP 708
P
Sbjct: 796 MAP 798
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/69 (28%), Positives = 21/69 (30%)
Frame = -3
Query: 896 PPXGGGGPXGKXXXXXXPLXXGXXXLXXGPXGXKXFXPGXXPXXXGGKPXXPPXXGXXXP 717
PP G P P G + GP PG P GG P PP G P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP--PGGLPPISGGPPPPPPPPGGCPP 770
Query: 716 XXPXXEXXG 690
P G
Sbjct: 771 PPPPPPPGG 779
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = -3
Query: 896 PPXGGGGPXGKXXXXXXPLXXGXXXLXXGPXGXKXFXPGXXPXXXGGKPXXPPXXGXXXP 717
PP GG P P+ G P G P P G P PP G P
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
Query: 716 XXP 708
P
Sbjct: 379 MAP 381
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/69 (28%), Positives = 21/69 (30%)
Frame = -3
Query: 896 PPXGGGGPXGKXXXXXXPLXXGXXXLXXGPXGXKXFXPGXXPXXXGGKPXXPPXXGXXXP 717
PP G P P G + GP PG P GG P PP G P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPP--PGGLPPISGGPPPPPPPPGGCPP 353
Query: 716 XXPXXEXXG 690
P G
Sbjct: 354 PPPPPPPGG 362
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +3
Query: 621 GERXVXXXXXPLPVXPXPXTPXXPGSFGXGGXRXPXPP 734
G V P P P P P PG G GG P PP
Sbjct: 241 GTNTVNSPGGPGPAGP-PGPPGPPGQDGSGGAAQPGPP 277
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -2
Query: 948 GGXPPPXXXGAXXFXXXPXXGGRGPXGXKXPXXXAPFXGXXXPXXGP 808
G PP G P GG GP G K P A G GP
Sbjct: 221 GPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGP 267
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -2
Query: 948 GGXPPPXXXGAXXFXXXPXXGGRGPXGXKXPXXXAPFXGXXXPXXGP 808
G PP G P GG GP G K P A G GP
Sbjct: 221 GPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGP 267
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -2
Query: 948 GGXPPPXXXGAXXFXXXPXXGGRGPXGXKXPXXXAPFXGXXXPXXGP 808
G PP G P GG GP G K P A G GP
Sbjct: 221 GPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGP 267
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -2
Query: 948 GGXPPPXXXGAXXFXXXPXXGGRGPXGXKXPXXXAPFXGXXXPXXGP 808
G PP G P GG GP G K P A G GP
Sbjct: 221 GPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGP 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,217,705
Number of Sequences: 27780
Number of extensions: 253586
Number of successful extensions: 742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -