Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M17
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    28   2.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   3.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   3.6  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    27   4.7  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   8.2  
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    26   8.2  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   8.2  

>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 575 LFEVLSSFFFGVETNS*EVPRAVSLSHLEGHVQRFQGSEDRYQLSVRKVDDV 420
           LFE+++SFFF +E     +P +  L+ +   +     S D YQ  +R    +
Sbjct: 276 LFELINSFFFPLEI---FIPASRLLNLVHSQISLQGTSSDNYQSKIRSAQSI 324


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 50  QRNQRSSKNAVRRIQAIREY-FHRNEPS 130
           +R+QRS +    R+Q + EY F+ N+PS
Sbjct: 268 KRHQRSKRIKAERMQEVEEYGFNPNQPS 295


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 386 RRREKTFTSRSKRRRLSGRTIGSDPRSPGSVVRAPPDARERQHEELLKNWSPRRRKTN 559
           R+ E+ F SR  RRR   +     P SP S       +++R      K++  +R +++
Sbjct: 83  RQHERPFRSRKSRRRKGKKAFSPRPGSPPSPSFYRSGSQKRARNLTTKDYFAKRSESS 140


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 490 SRCERETARGTSQELVSTPKKNELRTSK 573
           S+   +T++  + E  STPKK++ +TSK
Sbjct: 540 SKLANDTSKNANGETKSTPKKSKKKTSK 567


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 713 FDVAVTAEG*LQMFGYLYRTHSLGITASDVSG 618
           F + V A+G +Q  G++ ++ SLG TA  + G
Sbjct: 363 FGIGVIADGGIQNVGHMVKSLSLGATAVMMGG 394


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 690 RLTSDVRLSLSDSFSRDHRLRCLWLAH 610
           R TSD     +DSFSRD RL  + L+H
Sbjct: 480 RTTSD-NTDANDSFSRDLRLEKILLSH 505


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 436 RTDNW*RSSEPWKRCTCPSRCERETARGTSQELVSTPKKNELRTSKRSFAMP*RLNALV 612
           ++D + R  E W++      C R   RGT    +S PK       K  + MP  L A +
Sbjct: 18  QSDRFKRVGESWRKPRGIDSCVRRRFRGT----ISMPKIGYGNNKKTRYCMPNGLKAFL 72


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -3

Query: 569 EVLSSFF--FGVETNS*EVPRAVSLSHL 492
           E  SS+F    +E+NS ++P  V+LSHL
Sbjct: 781 EYFSSYFQFVSMESNSFDIPITVNLSHL 808


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,510,421
Number of Sequences: 5004
Number of extensions: 71834
Number of successful extensions: 224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)