Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_M17
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical pr...   124   6e-29
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    34   0.16 
Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL032639-5|CAA21629.1|  342|Caenorhabditis elegans Hypothetical ...    29   3.4  
U88308-4|AAB42323.1|  299|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical
           protein W07G4.4 protein.
          Length = 522

 Score =  124 bits (300), Expect = 6e-29
 Identities = 79/242 (32%), Positives = 130/242 (53%), Gaps = 9/242 (3%)
 Frame = +3

Query: 120 TNLQSADYDAVILILYPEELN----VPLPRHIGSFVDGIGKLDKHIHKSATVWQCD--YV 281
           T++  A +DAV+L+   + +     +     I   V+   KL      S ++ Q D   V
Sbjct: 15  TSIADAAFDAVVLVGSQDNVQQFGAIQQVSAIAPAVNNFLKLHSGAFNSTSLVQVDSSVV 74

Query: 282 SGGRIILAPTGKIT-PYHDARVVKEAAYKGMTRALDAGAKRPLLVVQNVVDFPDGQLVAI 458
             GR+IL+ TG ++  Y D R  + AA KG++ AL AG K PLL+      FP+ +LVA 
Sbjct: 75  PSGRLILSGTGNVSRDYDDVRRYQAAARKGISMALSAGVKSPLLITLPNSRFPNAELVAA 134

Query: 459 LGALEALYVPLQMRERDSTRNFSRIGLHA--EEKRTENFEKIVRNAIALERARVLARDIG 632
           LGAL  +Y PL +RE ++ +  +++GL A      +   EK+V    A + +  + RD+G
Sbjct: 135 LGALTPVYTPLNVREEENKQKLNQLGLLAIGNSDTSARLEKLVE---AYDASFTVCRDVG 191

Query: 633 GGDPERMSPIKIAEHLKSTFSGYSNXXXXXXXXXXXXXKDYPLLSAVSRAASHIDRHKPR 812
              PERM+P ++AE+++  F+   N             KD+PL++AV+RAA+ +  H+ R
Sbjct: 192 EAGPERMAPPRVAEYIQGAFAN-GNIKVTVVDDQSVILKDFPLMAAVNRAANCVKEHQAR 250

Query: 813 VV 818
           ++
Sbjct: 251 LI 252


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 26/77 (33%), Positives = 36/77 (46%)
 Frame = +2

Query: 353 SSVQRNDPCAGRRREKTFTSRSKRRRLSGRTIGSDPRSPGSVVRAPPDARERQHEELLKN 532
           S  Q   P   RRR  + + ++ RRR S    GS  RSP    R  P A  R+ +   + 
Sbjct: 442 SPSQSKSPAPRRRRSPSKSPQAPRRRRSPS--GSKSRSPRR--RRSPAAAPRRRQSPQRR 497

Query: 533 WSPRRRKTN*ELRKDRS 583
            SPRRR++     + RS
Sbjct: 498 RSPRRRRSPSSSSRSRS 514



 Score = 31.5 bits (68), Expect = 0.83
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +2

Query: 362 QRNDPCAGRRREKTFTSRSKRRRLSGRTIGSDPRSPGSVVRAPPDARERQHEELLKNWSP 541
           +R+   A RRR+     RS RRR S  +  S  RSP    R P    E+Q    +K+   
Sbjct: 481 RRSPAAAPRRRQSPQRRRSPRRRRSPSS-SSRSRSPPPPPRRPRQDSEQQAPVAVKSPEM 539

Query: 542 RRRKTN 559
           ++R+ N
Sbjct: 540 KKRRPN 545



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 305 PDREDHSLPRR*GGEGSSVQRNDPCAGRRREKTFTSRSKRRRLS-GRTIGSDPRSPGSVV 481
           P RE     RR      S  ++ P   R + ++ +  + RRR S  ++    PR   S  
Sbjct: 402 PKREIPPARRR---RSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPS 458

Query: 482 RAPPDARERQHEELLKNWSPRRRKT 556
           ++P   R R+     K+ SPRRR++
Sbjct: 459 KSPQAPRRRRSPSGSKSRSPRRRRS 483



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +2

Query: 305 PDREDHSLPRR*GGEGSSVQRNDPCAGRRREKTFTSRSKRRRLSGR-TIGSDPRSPGSVV 481
           P R + S P   GG GS   R    AG RR       S RR    R T  S PR  GS  
Sbjct: 185 PPRRNAS-PGGDGGGGSPAARRGGSAGNRRRSPPRRGSPRRGSPRRDTRRSPPRRRGSPP 243

Query: 482 RAPPDARERQHE 517
               D R+R+ +
Sbjct: 244 ARGGDRRDRRED 255



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
 Frame = +2

Query: 302 GPDREDHSLPRR*GGEGSSVQRNDPCAGRRRE---KTFTSRSK-RRRLSGRTIGSDPRSP 469
           G D    S   R GG   + +R+ P  G  R    +  T RS  RRR S    G D R  
Sbjct: 193 GGDGGGGSPAARRGGSAGNRRRSPPRRGSPRRGSPRRDTRRSPPRRRGSPPARGGDRRDR 252

Query: 470 GSVVRAPPDARERQHEELLKNWSPRRRKTN*ELRK 574
               R   D +ER+ E   +    ++R    ELR+
Sbjct: 253 REDRRPVRDEKEREEESRRREIERKKRHEEAELRQ 287


>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +2

Query: 335 R*GGEGSSVQRNDPCAGRRREKTFT-SRSKRRRLSGRTIGSDPRSPGSVVRAPPDARERQ 511
           R      S  R+ P   RR  K+ + SRS+ R    R   S  RSP  V R+P   R  +
Sbjct: 229 RSSSRSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPSPPRGSR 288

Query: 512 HEELLKNWSPRRRKT 556
                +  SPRR ++
Sbjct: 289 SPS--EKGSPRRSRS 301


>AL032639-5|CAA21629.1|  342|Caenorhabditis elegans Hypothetical
           protein Y38F1A.4 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 455 DPRSPGSVVRAPPDARERQHEELLKNWSPRRRKTN*ELRKDRSQCHS 595
           +PR P    R  P+A  +   + ++    R+RK N EL++ R +  S
Sbjct: 282 EPRPPPPSSRHLPEASSKADRQKIEEEEARKRKKNEELKRRRREARS 328


>U88308-4|AAB42323.1|  299|Caenorhabditis elegans Hypothetical
           protein C32E8.5 protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 392 REKTFTSRSKRRRLSGRTIGSDPRSPGSVVR--APPDARERQHEELLKNWSPRRRKTN*E 565
           R++    RS  RR   R+   D ++     R  +P   RE + E+   N SPRRR+ +  
Sbjct: 7   RDRRHRDRSPERRRRSRSRSRDRQTRRDTRRDDSPKIKREVKEEQFSDNDSPRRRRDDRG 66

Query: 566 LRKD 577
            R+D
Sbjct: 67  GRRD 70


>AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical
           protein Y60A3A.8 protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 302 QYNPAARYVVTLPHRRRLVDVLV-KFPDSVDEAPDMSRQWH 183
           QYNP A    T+  R+RL+D++   FP    ++  +   WH
Sbjct: 150 QYNPIAHPDRTIEFRQRLLDLMTSSFPKKSIKSKSLVIHWH 190


>Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical
           protein B0035.6 protein.
          Length = 727

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 254 RLVDVLVKFPDSVDEAPDMSRQWHVKF 174
           RL+D +VK P+ VD+      +WH+ F
Sbjct: 137 RLLDEIVKNPEEVDDDVQEELRWHLLF 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,742,401
Number of Sequences: 27780
Number of extensions: 416066
Number of successful extensions: 1326
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)